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Re: [mesa-users] Problem binding GYRE5.0rc1 in Mesa r9575
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From: <al...@ga...> - 2017-04-14 08:20:08
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Rich
Great! I did a mesa installation from scratch (as I ran into conflicts
when compiling routines in eos)
and eventually successfully compiled and linked everything (incl. GYRE5.0rc2).
For those who update: Not to forget, gyre.in files must also be
updated: check with appropriate files deeper along the path
mesa/gyre/gyre/test/
Thanks a lot!
Alfred
> Hi Alfred —
>
> I’ve just committed fixes to the development version of MESA which
> get the embedded GYRE going again. If you download/install revision
> 9680 of MESA (or later), then it will include version 5.0rc2 of
> GYRE, and everything should work without modification.
>
> cheers,
>
> Rich
>
>> On Apr 6, 2017, at 11:34 PM, al...@ga... wrote:
>>
>>
>> Rich,
>>
>> thanks for your information! I try to help fixing problems whenever
>> possible but this one proved to be beyond me. Therefore, I switch
>> to standby mode for the time being.
>>
>> I really appreciate your efforts,
>> thanks, Alfred
>>
>>
>>> Hi Alfred —
>>>
>>> At the moment, building GYRE 5.0 inside MESA simply will not work
>>> — I’ve not updated the interface module for a while. However, I’m
>>> working on this and hope to have a fix in a day or so.
>>>
>>> cheers,
>>>
>>> Rich
>>>
>>>> On Apr 5, 2017, at 11:37 PM, al...@ga... wrote:
>>>>
>>>> Aaron
>>>>
>>>> thanks for the suggestion. I thought the ./clean was superfluous
>>>> because I started with
>>>> a Mesa installation from scratch. But I did a ./clean now, as suggested.
>>>> The ./clean scrubbed away the mesa/gyre/gyre directory where
>>>> previously the executables and compiled/linked routines from the
>>>> standalone-installation lived -- this is
>>>> just what should happen I suppose. Then, starting an ./install in mesa
>>>> works fine again to the end of
>>>>
>>>> mesa/star has been built, tested, and exported.
>>>>
>>>> Then, the installation of the gyre package crashes at an earlier stage
>>>> than hitherto with:
>>>>
>>>>
>>>> make: *** Keine Regel vorhanden, um das Ziel „gyre_input.mod“,
>>>> benötigt von „gyre_lib.o“, zu erstellen. Schluss.
>>>>
>>>> /home/alfred/StarWare/Mesa/mesa/gyre/make
>>>> FAILED
>>>>
>>>>>>> translation: make: *** No rule found to generate target
>>>>>>> "gyre_input.mod",
>>>> which is used by "gyre_lib.o"
>>>>
>>>> Beats me even more than last night's experience.
>>>>
>>>> Alfred
>>>>
>>>>
>>>>
>>>>> Hi Alfred,
>>>>>
>>>>> Just a guess! Did you do a ./clean in mesa/star before linking with the
>>>>> new version of GYRE? It might be that your star module was built against
>>>>> the old version and is now confused by the new.
>>>>>
>>>>> Aaron
>>>>>
>>>>> On Wed, Apr 5, 2017 at 6:05 PM, <al...@ga...> wrote:
>>>>>
>>>>>>
>>>>>> Dear Blackbelters,
>>>>>>
>>>>>> recently I decided to upgrade to r9575 of Mesa; the undertaking was
>>>>>> painless and successful -- using GYRE 4.4, which comes with the Mesa
>>>>>> release. Motivated by Warrick's report on GYRE complaints I felt
>>>>>> forced to update also GYRE to 5.0rc1. Installing this latest GYRE
>>>>>> version in standalone mode (i.e. make in $GYRE_DIR) was successful and
>>>>>> all tests were passed successfully. However, going back to the mesa
>>>>>> directory and doing a new ./install to bind GYRE to Mesa so that it
>>>>>> can be called from within Mesa fails; and it just beats me why that
>>>>>> happens.
>>>>>>
>>>>>> Here some lines of the terminal output during the installation
>>>>>> procedure in the mesa directory:
>>>>>>
>>>>>> ...
>>>>>> export
>>>>>> done
>>>>>>
>>>>>> mesa/star has been built, tested, and exported.
>>>>>>
>>>>>> ************************************************
>>>>>>
>>>>>> /home/alfred/StarWare/Mesa/mesa/gyre
>>>>>> building gyre package.
>>>>>>
>>>>>> gyre/
>>>>>> gyre/bin/
>>>>>> ...
>>>>>> ...
>>>>>> Unescaped left brace in regex is deprecated, passed through in regex;
>>>>>> marked by <-- HERE in m/\G{ <-- HERE / at
>>>>>> /home/alfred/mesasdk/bin/fpx3 line 261.
>>>>>> FC gyre_soln_seg.f90
>>>>>> FC gyre_soln.f90
>>>>>> FC gyre_evol_model.f90
>>>>>> gyre_evol_model.f90:2327:13:
>>>>>>
>>>>>> where (pt%x /= 0._WP)
>>>>>> 1
>>>>>> Error: WHERE/ELSEWHERE clause at (1) requires a LOGICAL array
>>>>>> gyre_evol_model.f90:2328:9:
>>>>>>
>>>>>> f = SQRT(MAX(As/c_1, 0._WP))/pt%x
>>>>>> 1
>>>>>> Error: WHERE assignment target at (1) has inconsistent shape
>>>>>> gyre_evol_model.f90:2330:9:
>>>>>>
>>>>>> f = 0._WP
>>>>>> 1
>>>>>> Error: WHERE assignment target at (1) has inconsistent shape
>>>>>> gyre_evol_model.f90:2334:25:
>>>>>>
>>>>>> integrate(pt%x, f)
>>>>>> 1
>>>>>> Error: There is no specific function for the generic 'integrate' at (1)
>>>>>> gyre_evol_model.f90:2299:25:
>>>>>>
>>>>>> integrate(pt%x, f)
>>>>>> 1
>>>>>> Error: There is no specific function for the generic 'integrate' at (1)
>>>>>> makefile:73: die Regel für Ziel „gyre_evol_model.mod“ scheiterte
>>>>>> make: *** [gyre_evol_model.mod] Fehler 1
>>>>>>
>>>>>> /home/alfred/StarWare/Mesa/mesa/gyre/make
>>>>>> FAILED
>>>>>>
>>>>>>
>>>>>> What beats me is that apparently, in the standalone installation,
>>>>>> compiling/linking of *all* routines was successful.
>>>>>>
>>>>>> In terms of machine, I'm running ubuntu 16.04 LTS and the latest
>>>>>> release of mesasdk.
>>>>>>
>>>>>> Any hint or help is appreciated.
>>>>>>
>>>>>> Thanks, Alfred
>>>>>>
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------
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>>>>>>
>>>>
>>>>
>>>>
>>>>
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>>
>>
>>
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