MendelChecker Files

### Compiling

Checkout directly from source repository for the latest version of the software:

	$ git clone git://git.code.sf.net/p/mendelchecker/code MendelChecker
	$ cd MendelChecker
	$ make

Direct download via web:

	$ http://sourceforge.net/projects/mendelchecker/files/MendelChecker_v1.tar.gz/download
	$ tar -xvzf ./MendelChecker_v1.tar.gz
	$ cd MendelChecker
	$ make

### Documentation
	$ See http://sourceforge.net/p/mendelchecker/ for the latest documentation.


Running the MendelChecker with the --help flag will display usage options

	$ cd ./MendelChecker
	$ ./MendelChecker --help

MendelChecker usage

	$ ./MendelChecker --vcf ./exampleData/MendelChecker_example.vcf --ped ./exampleData/MendelChecker_example.ped --sexPrior 0.05 --out ./exampleData/test


###If you use MendelChecker, please cite 

    @misc{Van14MC,
      Author = {Van Hout, C.V., Gottipati S., Chen N., Clark A.G., },
      Title = { MendelChecker: Quality Control for Next Generation Sequencing Using Mendelian Inheritance in Pedigrees},
      Year  = {2014},
      Howpublished = {to be submitted}
    }

	@misc{Chen14MC,
      Author = {Chen N., Van Hout, C.V., Gottipati S., Clark A.G., },
      Title = {Using Mendelian inheritance to improve high throughput SNP discovery.},
      Year  = {2014},
      Howpublished = {to be submitted}
    }