Recent changes to LipidInterdigitation

LipidInterdigitation modified by Ismael Rodriguez Espigares

Ismael Rodriguez Espigares — Wed, 26 Feb 2014 15:42:27 -0000

--- v24
+++ v25
@@ -29,11 +29,8 @@
 * __Step__:  "step - 1" frames will be skipped at each iteration. One frame is analysed at each iteration.
 * __Output file path__: path to the output files that will be created. A file suitable for external analysis called _filename_.interdigitation will be created.

-##3. Tutorial

-(Work in progress)
-
-##4. Output file format (tabulated)
+##3. Output file format (tabulated)

 _filename_.interdigitation

LipidInterdigitation modified by Toni

Toni — Mon, 17 Feb 2014 12:58:55 -0000

LipidInterdigitation modified by Toni

Toni — Mon, 17 Feb 2014 12:58:29 -0000

LipidInterdigitation modified by Toni

Toni — Mon, 17 Feb 2014 12:57:58 -0000

LipidInterdigitation modified by Toni

Toni — Mon, 17 Feb 2014 12:57:26 -0000

LipidInterdigitation modified by Toni

Toni — Mon, 17 Feb 2014 12:57:01 -0000

LipidInterdigitation modified by Toni

Toni — Mon, 17 Feb 2014 12:56:20 -0000

--- v18
+++ v19
@@ -6,7 +6,7 @@
 * Width of the region of mass overlap, _w_ρ_, only defined if _Iρ_ > 0;
 * Fraction of inter-leaflet atomic contacts, 0 < _Ic_ < 1.

-Specifically, ![alt](http://latex.codecogs.com/png.latex?%5Cinline%20%5Cdpi%7B80%7D%20%5Cfn_jvn%20I_%5Crho%5E2%20%3D%20%7B4%20%5Cint%20%5Crho_a%28z%29%20%5Crho_b%28z%29%20dz%20%7D%20/%20%7B%5Cint%20%5B%20%5Crho_a%28z%29%20&plus%20%5Crho_b%28z%29%20%5D%5E2%20dz%7D); _w_ρ_ is the second central moment of _ρ_a ρ_b_; and _Ic_ is built by counting the number of atoms that are in contact with the opposite leaflet.
+Specifically, ![I_\rho^2 = {4 \int \rho_a(z) \rho_b(z) dz } / {\int [ \rho_a(z) + \rho_b(z) ]^2 dz} ](http://latex.codecogs.com/png.latex?%5Cinline%20%5Cdpi%7B80%7D%20%5Cfn_jvn%20I_%5Crho%5E2%20%3D%20%7B4%20%5Cint%20%5Crho_a%28z%29%20%5Crho_b%28z%29%20dz%20%7D%20/%20%7B%5Cint%20%5B%20%5Crho_a%28z%29%20&plus%20%5Crho_b%28z%29%20%5D%5E2%20dz%7D); _w_ρ_ is the second central moment of _ρ_a ρ_b_; and _Ic_ is built by counting the number of atoms that are in contact with the opposite leaflet.

 Please refer to the MEMBPLUGIN paper in Bioinformatics, [doi:10.1093/bioinformatics/btu037](http://bioinformatics.oxfordjournals.org/content/early/2014/01/21/bioinformatics.btu037), for the details.

LipidInterdigitation modified by Toni

Toni — Mon, 17 Feb 2014 12:55:25 -0000

LipidInterdigitation modified by Toni

Toni — Mon, 17 Feb 2014 12:54:58 -0000

LipidInterdigitation modified by Toni

Toni — Mon, 17 Feb 2014 12:54:36 -0000

--- v15
+++ v16
@@ -6,7 +6,9 @@
 * Width of the region of mass overlap, _w_ρ_, only defined if _Iρ_ > 0;
 * Fraction of inter-leaflet atomic contacts, 0 < _Ic_ < 1.

-Please refer to the MEMBPLUGIN paper in Bioinformatics, [doi:10.1093/bioinformatics/btu037](http://bioinformatics.oxfordjournals.org/content/early/2014/01/21/bioinformatics.btu037), for the definitions. 
+Specifically, ![alt](http://latex.codecogs.com/png.latex?%5Cinline%20%5Cdpi%7B80%7D%20%5Cfn_jvn%20I_%5Crho%5E2%20%3D%20%7B4%20%5Cint%20%5Crho_a%28z%29%20%5Crho_b%28z%29%20dz%20%7D%20/%20%7B%5Cint%20%5B%20%5Crho_a%28z%29%20&plus%20%5Crho_b%28z%29%20%5D%5E2%20dz%7D); _w_ρ_ is the second central moment of _ρ_a ρ_b_; and _Ic_ is built by counting the number of atoms that are in contact with the opposite leaflet.
+
+Please refer to the MEMBPLUGIN paper in Bioinformatics, [doi:10.1093/bioinformatics/btu037](http://bioinformatics.oxfordjournals.org/content/early/2014/01/21/bioinformatics.btu037), for the details. 

 ##1. Requirements