MDcons(Molecular Dynamics consensus) released /mdcons-src-2.0.tar.gz

Edrisse Chermak committed [e47f0e]

Added white background instead of blue for more...

MDcons (Molecular Dynamics contacts) released /mdcons-src-1.9.tar.gz

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Added handling of chain renaming not by script ...

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Added additional check on existing files that m...

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Added clean end on pdb read loop

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New utility code to add chain identifyer from t...

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Now showing the scale of conservation rates

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Updated with respect to new changes

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Added right reference of the BMC Bioinformatics...

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New compiled version of last tex

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Added the npdb to ind.txt display conservation ...

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Added assertions to avoid crashes due to uncorr...

MDcons (Molecular Dynamics contacts) released /mdcons-src-1.8.tar.gz

Edrisse Chermak committed [7b8b9e]

Now asking before cleaning inputs

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Reduced ticks for better view

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version 1.8

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Forgot a 'y' line

MDcons (Molecular Dynamics contacts) released /mdcons-src-1.7.tar.gz

MDcons (Molecular Dynamics contacts) released /mdcons-src-1.6.tar.gz

Edrisse Chermak committed [90a5f9]

clearer synthax for dummy characters and integers

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Use of bbox_inches option for better resolution

Edrisse Chermak committed [d9bb95]

Cleaned code and removed useless dummy variables

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Cleaned code and removed useless dummy variables

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Updated 3 chains case with addline script

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Cleaned code and removed useless dummy variables

Edrisse Chermak committed [d1a4aa]

Added automatic test to check if pdb is in stan...

MDcons (Molecular Dynamics contacts) released /mdcons-src-1.5.tar.gz

Edrisse Chermak committed [ce81af]

right result

MDcons (Molecular Dynamics contacts) released /mdcons-src-1.5.tar.gz

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right results

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right results

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right results

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replaced the "O" in chain by "%" to avoid any ...

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replaced the "O" in chain by "%" to avoid any c...

Edrisse Chermak committed [a54f43]

ymin and ymax were inverted

MDcons (Molecular Dynamics contacts) released /MDcons_manual.pdf

MDcons (Molecular Dynamics contacts) released /mdcons-src-1.4.tar.gz

Edrisse Chermak committed [18a4bd]

made with xlim and ylim

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made with xlim and ylim

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made with xlim and ylim instead of extent

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corrected order of xmax, xmin , ymax and ymin i...

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removing useless temp files

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pdf manual was not attached

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version 1.4

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added fact that Mdcons runs only on homogeneous...

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new convention for scale.sed with xlim and ylim...

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corrected permanent occurence of nchain.eq.4

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added pylab.ylim([ymin,ymax]) instead of exten...

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mappa and ind.txt should always be in non norma...

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added debug tests on normalized number of residues

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Checked python mappa.tmp and added prompt for o...

MDcons (Molecular Dynamics contacts) released /mdcons-src-1.4.tar.gz

Edrisse Chermak committed [b7ca2b]

Added manual TeX (to pdf)

Edrisse Chermak committed [ce1f41]

added pdf manual

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added FAQ

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better handling of the two cases, more clear

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small typo

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updated README with respect to new launching sc...

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added other possibilities for user to select a ...

Edrisse Chermak committed [eef924]

small typo

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removed useless ncontact_common calculation

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added documentation to entities

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removed backup version

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Added ligand

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added documentation to entities

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added documentation to entities

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reduced sed to 1 command

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added signalization of $PATH modification in .b...

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better formulation of the changes

MDcons released /mdcons-src-1.3.tar.gz

Edrisse Chermak committed [3d48c9]

updated README with respect to new launch script

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corrected spell check, and more explicit syntha...

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Better formatting, added infos on execution

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README_src.txt replaced by README.txt

Edrisse Chermak committed [e2c792]

corrected spell check

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version 1.3 on header

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Better formatting, added infos on execution

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README.txt instead of README_src.txt

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results in terms of percentages

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Faster I/O with writing mappa in Fortran instea...

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fresh map

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Faster I/O with writing mappa in Fortran instea...

MDcons released /mdcons-src-1.2.tar.gz

Edrisse Chermak committed [3cd1ac]

added prompting

Edrisse Chermak committed [8e27e5]

corrected a wrong sed sequence

MDcons released /mdcons-src-1.2.tar.gz

MDcons released /mdcons-src-1.2.tar.gz

Edrisse Chermak committed [139a19]

changed since now prepare traj doesn't exisr an...

Edrisse Chermak committed [e18a22]

get back to precision 0.01

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added .bashrc as well

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get back to png format

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added the 3 cases possible (corrected after tes...

Edrisse Chermak committed [9f41ab]

this is version 1.2

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corrected handling of gaps with normalized res...

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lot of corrections... handling now 3 cases corr...

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regrouped prepare trajectory and launch_mdcons ...

Edrisse Chermak committed [1ad9ee]

removed the bash lines and put in script

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added only the frames in list so that trajector...

Edrisse Chermak committed [2c6df5]

normalized residues (no overlap possible)