I saw that now we have available the package rjags for Mavericks, but I cannot use it.
My computer allows me to install, but to use the program, it gives me the following message:
Loading the package
library("rjags", lib.loc="/Library/Frameworks/R.framework/Versions/3.1/Resources/library")
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.1/Resources/library/rjags/libs/rjags.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.1/Resources/library/rjags/libs/rjags.so, 10): Symbol not found: ZN5RangeC1ERKNSt316vectorIiNS0_9allocatorIiEEEES6_
Referenced from: /Library/Frameworks/R.framework/Versions/3.1/Resources/library/rjags/libs/rjags.so
Expected in: /usr/local/lib/libjags.3.dylib
in /Library/Frameworks/R.framework/Versions/3.1/Resources/library/rjags/libs/rjags.so
Error: package or namespace load failed for ‘rjags’
Someone can help me? I don't have to much experience with R.
Many thank you
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You need to install the new JAGS-Mavericks-3.4.0.dmg file to go with the new rjags package. If you use the old Snow Leopard build of JAGS then you get that "Symbol not found" message. This is due to a change in the C++ library.
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Martyn Plummer many thank you for your answer.
I already try to install JAGS-Mavericks-3.4.0.dmg, but I always receive this message:
tar: Unrecognized archive format
tar: Error exit delayed from previous errors.
Warning in install.packages :
'tar' returned non-zero exit code 1
Error in install.packages : file ‘~/Downloads/JAGS-Mavericks-3.4.0.dmg’ is not an OS X binary package
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The error message tells you that JAGS-Mavericks-3.4.0.dmg is not an OS X binary package. It's a disk image. Mount it by double-clicking on the icon, then follow the instructions in the Readme.rtf file that you will find inside the mounted image.
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I'm having a problem installing the JAGS-Mavericks-3.4.0.dmg file. I downloaded it then installed it on my hard drive, but it's still just a disk image on my desktop. I still can't get rjags to work. I'm getting the same error that Mari is got when she first posted. I must be doing something wrong with the installation process?
Last edit: Ann Raiho 2014-09-25
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There are more details in the read me file (there is one in the DMG you downloaded, and another on the files page above).
When you say "it's still just a disk image on my desktop" - JAGS is installed as a command line utility, so it won't show up in /Applciations - but you can run it independently of R using Terminal.
Matt
EDIT: Martyn beat me to it :)
Last edit: Matt Denwood 2014-09-25
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I am receiving the same error. I have the newest version of R(3.3.1) and downloaded the newest version of JAGS(4.2.0) and rjags(4-6). I'm running Max OS X El Cap on a 2010 Macbook Pro.
I've tried reinstalling JAGS, reinstalling rjags, and reinstalling R. I've also reset my CRAN mirror.
I've checked all versions etc and tried going through Terminal with the above command but still can't get it to work... although I am a complete novice at using Terminal. Could you let me know how you did it through Finder please? Any advice would be appreciated!
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Hello
I am having trouble to load the rjags package on R 3.4.3. The package had downlaoded properly as i can see it on the right side of the RStudio but I am unable to load it
Error: package or namespace load failed for ‘rjags’:
.onLoad failed in loadNamespace() for 'rjags', details:
call: packageVersion(pkg, lib)
error: package ‘rjags’ not found
I tried to uninstall R and JAGS multiple times and dowload different versions of JAGS (3 and 4) but none seem to change anything.
I tried
devtools::install_url("http://sourceforge.net/projects/mcmc-jags/files/rjags/4/rjags_4-4.tar.gz",
args="--configure-args='--with-jags-include=/Users/casallas/homebrew/opt/jags/include/JAGS
--with-jags-lib=/Users/casallas/homebrew/opt/jags/lib'")
But I get :
Installation failed: Command failed (1)
I have also tried installing from the rjags source file:
install.packages('~/Downloads/rjags_4-6.tar.gz', repos = NULL, type="source")
But still get the same error message.
Any ideas?
Thanks
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I saw that now we have available the package rjags for Mavericks, but I cannot use it.
My computer allows me to install, but to use the program, it gives me the following message:
Loading the package
Someone can help me? I don't have to much experience with R.
Many thank you
You need to install the new JAGS-Mavericks-3.4.0.dmg file to go with the new rjags package. If you use the old Snow Leopard build of JAGS then you get that "Symbol not found" message. This is due to a change in the C++ library.
Martyn Plummer many thank you for your answer.
I already try to install JAGS-Mavericks-3.4.0.dmg, but I always receive this message:
tar: Unrecognized archive format
tar: Error exit delayed from previous errors.
Warning in install.packages :
'tar' returned non-zero exit code 1
Error in install.packages : file ‘~/Downloads/JAGS-Mavericks-3.4.0.dmg’ is not an OS X binary package
The error message tells you that JAGS-Mavericks-3.4.0.dmg is not an OS X binary package. It's a disk image. Mount it by double-clicking on the icon, then follow the instructions in the Readme.rtf file that you will find inside the mounted image.
Many thank you Martyn Plummer!!!
I was desperate with this!
I'm having a problem installing the JAGS-Mavericks-3.4.0.dmg file. I downloaded it then installed it on my hard drive, but it's still just a disk image on my desktop. I still can't get rjags to work. I'm getting the same error that Mari is got when she first posted. I must be doing something wrong with the installation process?
Last edit: Ann Raiho 2014-09-25
You need to have the right combination of R and JAGS. See here:
http://martynplummer.wordpress.com/2014/09/08/jags-3-4-0-for-mavericks/
Once you have the right combination, follow the instructions in my post to Mari on 2014-09-11 in this thread.
I assume you mean this error:
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
.... etc
If so, then you are almost certainly trying to use the Mavericks version of JAGS with the Snow Leopard version of R (or vice versa). Note that there are two builds of JAGS 3.4.0 available from the files page:
https://sourceforge.net/projects/mcmc-jags/files/JAGS/3.x/Mac%20OS%20X/
There are more details in the read me file (there is one in the DMG you downloaded, and another on the files page above).
When you say "it's still just a disk image on my desktop" - JAGS is installed as a command line utility, so it won't show up in /Applciations - but you can run it independently of R using Terminal.
Matt
EDIT: Martyn beat me to it :)
Last edit: Matt Denwood 2014-09-25
After updating R (3.3.1), Rstudio (0.99.903), JAGS (3.4.0), and rjags (4-6), I get the following error message:
I downloaded JAGS-Mavericks-3.4.0, which should be right:
I'd really like (r)jags to work again!
The
rjags_4-6package will not work with JAGS 3.4.0. You need to install JAGS 4.0.0 or higher. The latest release is 4.2.0.Thanks a lot! I don't know why I thought I had the latest release, but it works now!
I am receiving the same error. I have the newest version of R(3.3.1) and downloaded the newest version of JAGS(4.2.0) and rjags(4-6). I'm running Max OS X El Cap on a 2010 Macbook Pro.
I've tried reinstalling JAGS, reinstalling rjags, and reinstalling R. I've also reset my CRAN mirror.
In R, I'm inputting:
install.packages('rjags')I have also tried installing from the rjags source file:
install.packages('~/Downloads/rjags_4-6.tar.gz', repos = NULL, type="source")But still get the same error message.
Any thoughts?
This message:
means that the file exists, but you do not have correct permissions. Try
as super user.
Thank you, thank you, thank you! Going through the Terminal did not work for some reason, but I was able to change it using the Finder.
Hey guys, I am having the same problem with this.
I've checked all versions etc and tried going through Terminal with the above command but still can't get it to work... although I am a complete novice at using Terminal. Could you let me know how you did it through Finder please? Any advice would be appreciated!
All good - looks like I managed to solve the issue. Cheers
Hello
I am having trouble to load the rjags package on R 3.4.3. The package had downlaoded properly as i can see it on the right side of the RStudio but I am unable to load it
Error: package or namespace load failed for ‘rjags’:
.onLoad failed in loadNamespace() for 'rjags', details:
call: packageVersion(pkg, lib)
error: package ‘rjags’ not found
I tried to uninstall R and JAGS multiple times and dowload different versions of JAGS (3 and 4) but none seem to change anything.
I tried
devtools::install_url("http://sourceforge.net/projects/mcmc-jags/files/rjags/4/rjags_4-4.tar.gz",
args="--configure-args='--with-jags-include=/Users/casallas/homebrew/opt/jags/include/JAGS
--with-jags-lib=/Users/casallas/homebrew/opt/jags/lib'")
But I get :
Installation failed: Command failed (1)
I have also tried installing from the rjags source file:
install.packages('~/Downloads/rjags_4-6.tar.gz', repos = NULL, type="source")
But still get the same error message.
Any ideas?
Thanks