Code Log


Commit Date  
[c30e08] by martyn_plummer

On opensolaris, trailing dnl does not insert white space before next line.
Extra white space added to avoid syntax errors.

2009-09-21 18:16:29 Tree
[86d86d] by martyn_plummer

Fix BaseRNGFactory which kept spitting out the same RNG in the same state.

2009-09-21 06:51:39 Tree
[a38a34] by martyn_plummer

No need for special treatment of stochastic nodes in Graph class.

2009-09-20 21:10:37 Tree
[b4c1b2] by martyn_plummer

No need for special treatment of stochastic nodes in Graph class.

2009-09-20 21:10:36 Tree
[a9f3f7] by martyn_plummer

Do not need special access to stochastic nodes in graph

2009-09-20 19:46:14 Tree
[f2e480] by martyn_plummer

Default tracemonitors not based on C++ class but on node attributes:
- Unobserved random variable
- No unobserved parents

2009-09-20 19:25:20 Tree
[71ea31] by martyn_plummer

Enforcing use of typedef NodeSet.
NodeSet reverted to standard STL set with less operator for pointers.

2009-09-20 19:02:48 Tree
[7240ce] by martyn_plummer

Fix sampling order to be order in which stochastic nodes are created.

2009-09-20 19:01:56 Tree
[ae90f6] by martyn_plummer

Fix memory management of nodes generated during index expression, now that
it is not handled automatically by Graph

2009-09-20 18:21:33 Tree
[eb4f89] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:46 Tree
[71bf9b] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:46 Tree
[269687] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:46 Tree
[c64516] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:46 Tree
[7aeb16] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:46 Tree
[bb7e05] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:46 Tree
[c746c1] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:38 Tree
[1b0f1f] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:38 Tree
[077130] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:38 Tree
[b4a4d6] by martyn_plummer

Major changes to memory management.
- The Model class is responsible for managing the nodes in the model
- No more reference counting for nodes
- Model::graph returns a constant reference to avoid interference with
memory management
- Compilers and factories take model directly as an argument instead of
graph.

2009-09-20 14:22:38 Tree
[b6dc3c] by martyn_plummer

Changes required to enforce reproducibility of JAGS runs.
Stochastic nodes have serial number and "<" operator
StochasticNodeSet is an STL set that stores Stochastic Node pointers in order
of creation rather than location in memory.

2009-09-19 20:11:12 Tree
[e8e34e] by martyn_plummer

Document changes to log likelihood

2009-09-17 21:43:19 Tree
[13da31] by martyn_plummer

Typo in error message

2009-09-17 19:44:39 Tree
[162d68] by martyn_plummer

Fix numerical problems in truncated distributions.

2009-09-17 14:29:46 Tree
[bd49fb] by martyn_plummer

Allow mixture nodes in conjugate Wishart sampler.

2009-09-15 22:19:02 Tree
[f93adc] by martyn_plummer

Fix Subtract::isScale

2009-09-14 19:42:20 Tree
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