Maximum Common Genome Alignment (MCGA) Tool
MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees.
Features
- Sequence clustering with CD-HIT software
- Summarising core and accessory genome statistics
- Summarise the shared or accessory gene content between strains
- Creating multiple sequence alignments based on core gene content
- Identify polymorphic sites in 'core genome' sequence alignments
Categories
Bio-InformaticsLicense
GNU Library or Lesser General Public License version 3.0 (LGPLv3)
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