Recent changes to Home

Home modified by Jan Rohlicek

Jan Rohlicek — Fri, 31 May 2019 12:05:11 -0000

--- v4
+++ v5
@@ -2,4 +2,4 @@

 MCE is experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. It was tested under Windows 95, 98, NT 4, Win 2000, Win XP, Win7, Win8 and Win10.

-Browse Pages here on wiki to learn more ([link](https://sourceforge.net/p/mce-marching-cube-eld/wiki/browse_pages/)).
+Browse Pages here on wiki to learn more ([link](https://sourceforge.net/p/mce-marching-cube-eld/wiki/browse_pages/)) or see youtube tutorials ([link](https://www.youtube.com/channel/UCYdvxKNX5VATdTN_sSxIGdQ))

Home modified by Jan Rohlicek

Jan Rohlicek — Fri, 31 May 2019 12:02:55 -0000

--- v3
+++ v4
@@ -1,70 +1,5 @@
 **What is Marching Cube ELD (MCE)?**

-MCE is experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. It was tested under Windows 95, 98, NT 4, Win 2000, Win XP, Win7 and Win8.
+MCE is experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. It was tested under Windows 95, 98, NT 4, Win 2000, Win XP, Win7, Win8 and Win10.

-**3.2.0 news:**
-- Troubles with surface transparency solved 
-- New input file type added - *.xplor. It is one of the SUPERFLIP output.
-- new CMD option added: -output [crystals|xyz|m40] [file_name] 
-- New input file type added - *.3d 
-- MCE can load atom coordinates from *.cif files. Use menu->load atoms or use the cmd option. 
-CMD option: write the path of the cif file to the end of the cmd e.g.: mce.exe -lcp 0.1 0 -0.1 -lcs 0.5 0.2 -0.3 map1.fou map2.fou atoms.cif 
-- GSAS monoclinic example
-- New file formats for save peak function - general *.xyz and Jana2006 compatible *.m40 file formats
-
-**2.3.0 news:**
-- MCE can load atom coordinates from *.m40 file format (JANA2006) 
-- showing distances from nearest atoms when placing the new yellow "q" atom to the map 
-- atom info (label and x, y, z coords) is working 
-- 3D picking of GRD(JANA2006) and GSAS map format is working correctly 
-- GRD(JANA2006) and GSAS maps are shown for all visible cells. This can be performed by using SG Setup window 
-
-**2.2.2 news:**
-- new command line option
-MCE cmd option: 
------------------------------------------- 
--s OpenGL setting (StereoHW)
--i OpenGL setting (StereoInterlaced)
--v OpenGL setting (StereoVertical)
--lcp [level1 level2 level3]    level control primary map settings
-This argument needs 3 values
--lcs [level1 level2 level3]    level control secondary map settings
-This argument needs 3 values
--uca [0|1] unit cell axes visibility; 1=visible, 0=hidden
--mds [0|1|2|3|4|5] Molecule display style. 0=off, 1=line, 2=cylinder
-3=ball and line, 4=ball and cylinder, 5=scaled ball
--eld_line_style [0|1]  ELD map display style. 0=lines, 1=cylinders
--organic   Data type
--inorganic Data type
--color [plevel1|plevel2|plevel3|slevel1|slevel2|level3|bg] [r g b] 
-Color settings. This argument can be used more than once.
-each color option needs 3 values red, green and blue [0-255]
-e.g. mce.exe -color bg 0 0 0
-e.g. mce.exe -color plevel1 255 0 0 -color plevel2 0 255 0
--eld_mode [prim|sec] [0|1|2|3] Map mode: 0=contour lines, 1=surface,
-2=contour and surface, 3=off
-e.g. mce.exe -eld_mode prim 2 -eld_mode sec 0
-note: The surface mode turns off level2 and level3
--eld_normals [prim|sec] [0|1]  Surface normals. 0=normal, 1=reverse
-To load file use just file name (with full path if the file is not in the same directory) 
-e.g. mce.exe map1.fou map2.fou 
-another expample:
-mce.exe -lcp 0.1 0 -0.1 -lcs 0.5 0.2 -0.3 map1.fou map2.fou
------------------------------------------
-
-**2.2.0 news:**
-- Drawing cavities as balls
-- Deleting atoms and bonds
-
-**2.1.00 - 2.1.11 news:**
-
-- New classes created: I/O classes; Atom, molecule, UnitCell classes, etc. (the code is more synopticall)
-- Add functions: "D" Delete selected molecule, Saving colors in "Color settings" window.
-- Save map settings and use it for next file or files.
-
-
-**Bugs report:**
-
-2.2.3: cmd line argument such as file path can contain white spaces
-2.2.2: File permissions in program files directory solved
-2.1.11: pov-ray export repaired.
+Browse Pages here on wiki to learn more ([link](https://sourceforge.net/p/mce-marching-cube-eld/wiki/browse_pages/)).

Home modified by Jan Rohlicek

Jan Rohlicek — Thu, 12 May 2016 22:16:00 -0000

--- v2
+++ v3
@@ -1,3 +1,70 @@
 **What is Marching Cube ELD (MCE)?**

-MCE is experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. It was tested under Windows 95, 98, NT 4, Win 2000, Win XP, Win7 and Win8..
+MCE is experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. It was tested under Windows 95, 98, NT 4, Win 2000, Win XP, Win7 and Win8.
+
+**3.2.0 news:**
+- Troubles with surface transparency solved 
+- New input file type added - *.xplor. It is one of the SUPERFLIP output.
+- new CMD option added: -output [crystals|xyz|m40] [file_name] 
+- New input file type added - *.3d 
+- MCE can load atom coordinates from *.cif files. Use menu->load atoms or use the cmd option. 
+CMD option: write the path of the cif file to the end of the cmd e.g.: mce.exe -lcp 0.1 0 -0.1 -lcs 0.5 0.2 -0.3 map1.fou map2.fou atoms.cif 
+- GSAS monoclinic example
+- New file formats for save peak function - general *.xyz and Jana2006 compatible *.m40 file formats
+
+**2.3.0 news:**
+- MCE can load atom coordinates from *.m40 file format (JANA2006) 
+- showing distances from nearest atoms when placing the new yellow "q" atom to the map 
+- atom info (label and x, y, z coords) is working 
+- 3D picking of GRD(JANA2006) and GSAS map format is working correctly 
+- GRD(JANA2006) and GSAS maps are shown for all visible cells. This can be performed by using SG Setup window 
+
+**2.2.2 news:**
+- new command line option
+MCE cmd option: 
+------------------------------------------ 
+-s OpenGL setting (StereoHW)
+-i OpenGL setting (StereoInterlaced)
+-v OpenGL setting (StereoVertical)
+-lcp [level1 level2 level3]    level control primary map settings
+This argument needs 3 values
+-lcs [level1 level2 level3]    level control secondary map settings
+This argument needs 3 values
+-uca [0|1] unit cell axes visibility; 1=visible, 0=hidden
+-mds [0|1|2|3|4|5] Molecule display style. 0=off, 1=line, 2=cylinder
+3=ball and line, 4=ball and cylinder, 5=scaled ball
+-eld_line_style [0|1]  ELD map display style. 0=lines, 1=cylinders
+-organic   Data type
+-inorganic Data type
+-color [plevel1|plevel2|plevel3|slevel1|slevel2|level3|bg] [r g b] 
+Color settings. This argument can be used more than once.
+each color option needs 3 values red, green and blue [0-255]
+e.g. mce.exe -color bg 0 0 0
+e.g. mce.exe -color plevel1 255 0 0 -color plevel2 0 255 0
+-eld_mode [prim|sec] [0|1|2|3] Map mode: 0=contour lines, 1=surface,
+2=contour and surface, 3=off
+e.g. mce.exe -eld_mode prim 2 -eld_mode sec 0
+note: The surface mode turns off level2 and level3
+-eld_normals [prim|sec] [0|1]  Surface normals. 0=normal, 1=reverse
+To load file use just file name (with full path if the file is not in the same directory) 
+e.g. mce.exe map1.fou map2.fou 
+another expample:
+mce.exe -lcp 0.1 0 -0.1 -lcs 0.5 0.2 -0.3 map1.fou map2.fou
+-----------------------------------------
+
+**2.2.0 news:**
+- Drawing cavities as balls
+- Deleting atoms and bonds
+
+**2.1.00 - 2.1.11 news:**
+
+- New classes created: I/O classes; Atom, molecule, UnitCell classes, etc. (the code is more synopticall)
+- Add functions: "D" Delete selected molecule, Saving colors in "Color settings" window.
+- Save map settings and use it for next file or files.
+
+
+**Bugs report:**
+
+2.2.3: cmd line argument such as file path can contain white spaces
+2.2.2: File permissions in program files directory solved
+2.1.11: pov-ray export repaired.

Home modified by Jan Rohlicek

Jan Rohlicek — Thu, 12 May 2016 22:13:19 -0000

--- v1
+++ v2
@@ -1,8 +1,3 @@
-Welcome to your wiki!
+**What is Marching Cube ELD (MCE)?**

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
-
-The wiki uses [Markdown](/p/mce-marching-cube-eld/wiki/markdown_syntax/) syntax.
-
-[[members limit=20]]
-[[download_button]]
+MCE is experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. It was tested under Windows 95, 98, NT 4, Win 2000, Win XP, Win7 and Win8..

Home modified by Jan Rohlicek

Jan Rohlicek — Fri, 02 Oct 2015 11:42:38 -0000

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Project Members:

Jan Rohlicek (admin)