Where to find which contigs are assigned to which bin?

An automatic tool for binning metagenomics sequences

Brought to you by: yuwwu

Where to find which contigs are assigned to which bin?

Forum: General Discussion

Creator: Mabel W

Created: 2017-08-16

Updated: 2017-08-16

Mabel W - 2017-08-16

According to the readme file:
(out).summary -- a summary file describing which contigs are being classified into which bin.

However, I was only able to view the statistics of the bins:
Bin name Abundance Completeness Genome size GC content
Dan_AbySS_Maxbin.001.fasta 699.97 24.3% 925012 35.2
Dan_AbySS_Maxbin.002.fasta 673.01 18.7% 954665 51.7
Dan_AbySS_Maxbin.003.fasta 489.28 95.3% 6248111 52.9

Please let me know where I could see which contigs are being classified into which bin. Thanks a lot!

If you would like to refer to this comment somewhere else in this project, copy and paste the following link:

Joy Buongiorno - 2017-10-01

I am having the same problem. Did you ever figure out the answer to the issue?

If you would like to refer to this comment somewhere else in this project, copy and paste the following link:

Log in to post a comment.