Re: [Mauve-users] Mauve alignment not running

[Aaron D. <aar...@ut...>]

Hi Gabriele,
First suggestion, try copying the sequence files from your file server
over to the local disk (C:) and running the alignment, in order to rule
out a network file access problem.
If that fails, can you tell us what version of windows you are using,
and also whether progressiveMauve.exe appears in the windows task
manager when you run it?
And was there any other error message that popped up? If not, can you
try aligning the two files on another computer with a different OS (eg
Mac) or version of Windows?
Best,
-Aaron
On Tue, 2017-04-11 at 07:37 +0000, Gab...@lg... wrote:
> Hi, I tried to make an alignment in Mauve using two fasta files. The
> alignment did not run but I got the following message:
>  
> OS name is: Windows 7 arch: amd64
> Executing:
> win64\progressiveMauve --output=\\umwelt.bayern.de\LGL-
> Users\Home\OS_L-Z\Margos_G\Dokumente\Bob Lane\CA690\Mauve
> CA690\PKo_CA690_genome_align\DN127_CA690 --output-guide-
> tree=\\umwelt.bayern.de\LGL-Users\Home\OS_L-Z\Margos_G\Dokumente\Bob
> Lane\CA690\Mauve CA690\PKo_CA690_genome_align\DN127_CA690.guide_tree
> --backbone-output=\\umwelt.bayern.de\LGL-Users\Home\OS_L-
> Z\Margos_G\Dokumente\Bob Lane\CA690\Mauve
> CA690\PKo_CA690_genome_align\DN127_CA690.backbone
> \\umwelt.bayern.de\LGL-Users\Home\OS_L-Z\Margos_G\Dokumente\Bob
> Lane\CA690\Mauve CA690\Bbis_DN127_complete_genome_reord.fasta
> \\umwelt.bayern.de\LGL-Users\Home\OS_L-Z\Margos_G\Dokumente\Bob
> Lane\CA690\Mauve CA690\CA690_DJ_spades_contigs_1000.fasta
>  
> What can I do?
>  
> Gabriele Margos
>  
> Gabriele Margos
> German National Reference Centre for Borrelia
> Bavarian Health and Food Safety Authority
> Veterinärstrasse 2
> 85764 Oberschleißheim
> Tel. 09131/68085883
> email: 
> gma...@gm...
> gab...@lg...
>  
> 
-- 
Aaron E. Darling, Ph.D.
Associate Professor, ithree institute
University of Technology Sydney
Australia

http://darlinglab.org
twitter: @koadman





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