Re: [Mauve-users] Mauve alignment not running
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koadman
From: Aaron D. <aar...@ut...> - 2017-04-11 09:28:16
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Hi Gabriele, First suggestion, try copying the sequence files from your file server over to the local disk (C:) and running the alignment, in order to rule out a network file access problem. If that fails, can you tell us what version of windows you are using, and also whether progressiveMauve.exe appears in the windows task manager when you run it? And was there any other error message that popped up? If not, can you try aligning the two files on another computer with a different OS (eg Mac) or version of Windows? Best, -Aaron On Tue, 2017-04-11 at 07:37 +0000, Gab...@lg... wrote: > Hi, I tried to make an alignment in Mauve using two fasta files. The > alignment did not run but I got the following message: > > OS name is: Windows 7 arch: amd64 > Executing: > win64\progressiveMauve --output=\\umwelt.bayern.de\LGL- > Users\Home\OS_L-Z\Margos_G\Dokumente\Bob Lane\CA690\Mauve > CA690\PKo_CA690_genome_align\DN127_CA690 --output-guide- > tree=\\umwelt.bayern.de\LGL-Users\Home\OS_L-Z\Margos_G\Dokumente\Bob > Lane\CA690\Mauve CA690\PKo_CA690_genome_align\DN127_CA690.guide_tree > --backbone-output=\\umwelt.bayern.de\LGL-Users\Home\OS_L- > Z\Margos_G\Dokumente\Bob Lane\CA690\Mauve > CA690\PKo_CA690_genome_align\DN127_CA690.backbone > \\umwelt.bayern.de\LGL-Users\Home\OS_L-Z\Margos_G\Dokumente\Bob > Lane\CA690\Mauve CA690\Bbis_DN127_complete_genome_reord.fasta > \\umwelt.bayern.de\LGL-Users\Home\OS_L-Z\Margos_G\Dokumente\Bob > Lane\CA690\Mauve CA690\CA690_DJ_spades_contigs_1000.fasta > > What can I do? > > Gabriele Margos > > Gabriele Margos > German National Reference Centre for Borrelia > Bavarian Health and Food Safety Authority > Veterinärstrasse 2 > 85764 Oberschleißheim > Tel. 09131/68085883 > email: > gma...@gm... > gab...@lg... > > -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. |