Re: [Mauve-users] genome ordering
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From: Eleni M. <ele...@ta...> - 2017-03-01 18:17:36
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Images didn't come through, sorry. Please see attached. On Wed, Mar 1, 2017 at 12:01 PM, Eleni Mijalis <ele...@ta...> wrote: > Hey there, > > I am having issues with getting different alignment results based on the > ordering of input files. > > I am aligning 7 genomes, and this is these are two examples of alignments > differing based on order: > [image: Inline image 1] > > [image: Inline image 2] > > As you can see, the first example gives 1 LCB spanning the entirety of all > the genomes, and the second example (same genomes, different order) has > more LCBs spanning different areas of each genome. These two are just > samples of what output I get based on input permutation. > > I am using default parameters, so should I adjust parameters to get more > consistent results? Why would ordering matter when determining regions of > similarity? Thanks for your help. > > Eleni > |