[Mauve-users] Error in aligning GenBank files 2

[Hans v. L. <han...@ou...>]

Hi all,


I'm a new user to Mauve but ran into a problem .

Aligning fasta files of large bacterial genomes goes fine! (progressiveMauve).


However, aligning Genbank files of the same genomes gives an error (see below)

As this error was reported before on this forum:

https://sourceforge.net/p/mauve/mailman/message/35206741/

I also tried  those two genomes Aaron suggested but failed.

-Don't think it's a permission problem (admin and fasta stored same place).

-Renaming files either as I renamed the Fasta files as well.

-I used default alignment parameters


Any help is appreciated.


Happy New Year,


Hans


I am running Mauve is 2.4.0, latest JRE version (8u112) on a 64-bit Windows 8 computer.


------------------------------------------------------

Running alignment.
Executing
  win64\progressiveMauve
    --output=C:\Users\Hans\Desktop\Aaron\SuggestionAaron
    --output-guide-tree=C:\Users\Hans\Desktop\Aaron\SuggestionAaron.guide_tree
    --backbone-output=C:\Users\Hans\Desktop\Aaron\SuggestionAaron.backbone
    C:\Users\Hans\Desktop\Aaron\CP000002.gbk.txt
    C:\Users\Hans\Desktop\Aaron\CP005965.gbk.txt
Storing raw sequence at C:\Users\Hans\AppData\Local\Temp\raw883E.tmp
Sequence loaded successfully.

This application has requested the Runtime to terminate it in an unusual way.
C:\Users\Hans\Desktop\Aaron\CP000002.gbk.txt 4535451 base pairs.

Please contact the application's support team for more information.
Storing raw sequence at C:\Users\Hans\AppData\Local\Temp\raw8BAA.tmp
Exited with error code: 3
-------------------------------------------------------------------