[Mauve-users] SNP extraction

[Aleksander M. <ale...@nl...>]

Hi all, 

I have some problems with SNP extraction from alignment of 48 genomes (the output file remains empty). 
I noticed, that we did not set the progressiveMauve to save the guide tree. Could this play a role in SNP extract failing? 

If so.. Is there a fast option to make a guide tree from the alignment or is it easier to just run alignment again? 

Thank you. 

Best, 
Aleksander 

-- 
National Laboratory of Health, Environment and Food (NLZOH) 
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