[Mauve-users] Cannot bind file to parent
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From: Chaib De M. M. <m.c...@ru...> - 2016-10-05 07:20:35
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Hello, I am new to this list, and I don't know whether this has been asked before. I apologize before hand if there's duplication. When I try to upload my reference and then draft genome to Mauve, I get an error saying that java cannot bind my document to parent. I am running the latest JRE version (8u102) on a 64-bit Windows computer. I understand that it should work, because Mauve can work on 1.4 or later. Could you please point out what could be the issue? See details below: Thank you! Maryam ------- shown Exception in thread "AWT-EventQueue-0" java.lang.InternalError: Unable to bind C:\Users\p270270\Desktop\CompGenTutorial\NC_011748.fna to parent at sun.awt.shell.Win32ShellFolder2$4.call(Unknown Source) at sun.awt.shell.Win32ShellFolder2$4.call(Unknown Source) at sun.awt.shell.Win32ShellFolderManager2$ComInvoker.invoke(Unknown Source) at sun.awt.shell.ShellFolder.invoke(Unknown Source) at sun.awt.shell.Win32ShellFolder2.getIShellFolder(Unknown Source) at sun.awt.shell.Win32ShellFolder2.access$200(Unknown Source) at sun.awt.shell.Win32ShellFolder2$16.call(Unknown Source) at sun.awt.shell.Win32ShellFolder2$16.call(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at sun.awt.shell.Win32ShellFolderManager2$ComInvoker$3.run(Unknown Source) at java.lang.Thread.run(Unknown Source) Exception in thread "AWT-EventQueue-0" java.lang.InternalError: Unable to bind C:\Users\p270270\Desktop\CompGenTutorial\SRR292770_unordered.fasta to parent at sun.awt.shell.Win32ShellFolder2$4.call(Unknown Source) at sun.awt.shell.Win32ShellFolder2$4.call(Unknown Source) at sun.awt.shell.Win32ShellFolderManager2$ComInvoker.invoke(Unknown Source) at sun.awt.shell.ShellFolder.invoke(Unknown Source) at sun.awt.shell.Win32ShellFolder2.getIShellFolder(Unknown Source) at sun.awt.shell.Win32ShellFolder2.access$200(Unknown Source) at sun.awt.shell.Win32ShellFolder2$16.call(Unknown Source) at sun.awt.shell.Win32ShellFolder2$16.call(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at sun.awt.shell.Win32ShellFolderManager2$ComInvoker$3.run(Unknown Source) at java.lang.Thread.run(Unknown Source) Copying... C:\Users\p270270\Desktop\CompGenTutorial\NC_011748.fna\NC_011748.fna to C:\Users\p270270\Desktop\CompGenTutorial\MauveOutput\alignment1\NC_011748.fna java.io.FileNotFoundException: C:\Users\p270270\Desktop\CompGenTutorial\NC_011748.fna\NC_011748.fna (The system cannot find the path specified) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(Unknown Source) at java.io.FileInputStream.<init>(Unknown Source) at org.gel.air.util.IOUtils.copyFile(Unknown Source) at org.gel.mauve.contigs.ContigOrderer.copyInputFiles(Unknown Source) at org.gel.mauve.contigs.ContigMauveAlignFrame.alignButtonActionPerformed(Unknown Source) at org.gel.mauve.gui.AlignFrame$9.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$500(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Running alignment. Executing win64\progressiveMauve --output=C:\Users\p270270\Desktop\CompGenTutorial\MauveOutput\alignment1\alignment1 --skip-refinement --weight=200 --output-guide-tree=C:\Users\p270270\Desktop\CompGenTutorial\MauveOutput\alignment1\alignment1.guide_tree --backbone-output=C:\Users\p270270\Desktop\CompGenTutorial\MauveOutput\alignment1\alignment1.backbone C:\Users\p270270\Desktop\CompGenTutorial\NC_011748.fna\NC_011748.fna C:\Users\p270270\Desktop\CompGenTutorial\SRR292770_unordered.fasta\SRR292770_unordered.fasta Exception FileNotOpened thrown from Unknown() in ..\libGenome\gnFileSource.cpp 67 Called by Unknown() Exited with error code: -1073741676 -- Maryam Chaib De Mares M.Sc. Evolutionary Biology PhD Candidate - Microbial Ecology Department Groningen Institute for Evolutionary Life Sciences (GELIFES) Rijksuniversiteit Groningen Nijenborgh 7, 9747 AG Groningen Linnaeusborg, room 0766 +31 50 363 2169 m.c...@ru... |