Re: [Mauve-users] Progressive alignment - contigs

[Walter, M. <ma...@wa...>]

Hi Cristina,

to help you further, it would be helpful, if you provide the error message
you got as well as the type of input files you  are using.
And indeed, you can use prokaryotic contigs. I'm regularly align contigs in
multiple fasta files (one fasta file per organism) against fasta or genbank
of a reference genome.
Most of the time it works straightforward. Sometimes I have to remove
dashes (-) from the fasta header lines, if present.

--
Kind regards,
Mathias

Am 18.08.2016 6:15 nachm. schrieb "Cristina Kraemer Zimpel" <
ck...@gm...>:

> Hello
> I wonder if can I perform progressive alignment with MAUVE using contigs
> of prokaryotic genomes?
> I have tried but the analysis just stops, so I think I am using the
> contigs as input file incorrectly.
> Can you give some light here?
> Thank you so much for your time
>
>
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