[Mauve-users] SNPs finder - draft and complete genomes

[Cristina K. Z. <cri...@gm...>]

Greetings
I intend to align genomes of Mycobacterium strains in order to find SNPs
using MAUVE. Few genomes are complete and few are draft.

For the draft genomes. Should I reorder the contigs with the reference:?
And which output file after reorder contigs should I use for the comparison
with complete genomes.
Thank you
Best regards.

-- 
Cristina Kraemer Zimpel

Médica Veterinária, Especialista em Medicina Veterinária do Coletivo
Mestranda em Epidemiologia Experimental Aplicada às Zoonoses

Departamento de Medicina Veterinária Preventiva e Saúde Animal (VPS), FMVZ
- USP
Av. Prof. Dr. Orlando Marques de Paiva, 87 - Cidade Universitária
São Paulo, SP, CEP 05508 270, Brasil