[Mauve-users] SNP / indel format to VCF conversion?

[Joseph F. <jos...@gm...>]

Hi all,

Has anyone tried to convert the SNP and/or indel format that Mauve exports
into a VCF-like format? I've aligned assembled genomes to a reference
genome, and would like to predict the effect of various differences, and
tools like snpEff required VCF input. I plan to try to write my own, but I
wondered if anyone's dealt with this before.

Thanks for any advice, leads, etc. ...
~Joe

-- 
Joseph Fass
Bioinformatics Data Analyst
UC Davis Genome Center - Bioinformatics Core
http://bioinformatics.ucdavis.edu/
jn...@uc...
phone ~ 530.752.2698