Re: [Mauve-users] Query about mauve error

[Aaron D. <aar...@ut...>]

Hello Hiren,

On Tue, 2013-07-16 at 20:23 +1000, Hiren Ghosh wrote:
> Dear all, 
>  I am using mauve contig mover through command line .I have a
> question: once i am running mauve contig mover i am getting n number
> iteration for each run and for each run mauve generate one folder name
> alignment1, alignment2.....alignmentN . Now i want only final
> iteration result, from command line after running mauve how i will
> automatically go to that folder and pass the result to another folder
> in different location. 

This is more of a unix scripting question than a Mauve question. One way
to do it would be to write a for loop in your shell (bash? csh? korn
shell?) that counts down from a large number and exits the loop when it
finds the alignmentN that exists. Typing "shell for loop" in your
favorite search engine will get you some ideas. 

And there are surely other ways to solve the problem that don't involve
for loops.


-- 
Aaron E. Darling, Ph.D.
Associate Professor, ithree institute
University of Technology Sydney
Australia

http://darlinglab.org
twitter: @koadman



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