a workaround for mauveAligner: symbol lookup error: mauveAligner: undefined...
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koadman
Not sure this is the right place for this, but just wanted to let people know:
After installing mauve using:
conda install -c bioconda mauve
I ran into the following error upon the most simple use case (i.e.: mauveAligner multi_fasta_file_path):
mauveAligner: symbol lookup error: mauveAligner: undefined symbol: _ZN6genome10gnSequence10LoadSourceESs
progressiveMauve had the same problem.
Finally, I managed to find a workaround that allowed me to use progressiveMauve only: I removed the mauve package, and then used:
conda install -c bioconda progressivemauve=snapshot_2015_02_13
Thanks!