#62 Thread-7

[Gizem Avcı]

Hi there,
I am planning to use Mauve for a project for genome comparison. During the alignment I got the error below, but I could not find a way to solve it. Could you help me about it?
Thanks in advance,
Gizem

root alignment has 637 superintervals
root alignment length: 7255469
Organisms have 51.5% GC
Completed without error.
Alignment complete!
Exception in thread "Thread-7" org.biojava.bio.BioError: Unable to initialize DNATools
at org.biojava.bio.seq.DNATools.<clinit>(DNATools.java:137)
at org.biojava.bio.seq.io.SeqIOTools.getDNAParser(SeqIOTools.java:1045)
at org.biojava.bio.seq.io.SeqIOTools.readGenbank(SeqIOTools.java:149)
at org.gel.mauve.format.GenbankFileFormat.readFile(Unknown Source)
at org.gel.mauve.format.BaseFormat$2.<init>(Unknown Source)
at org.gel.mauve.format.BaseFormat.makeIterator(Unknown Source)
at org.gel.mauve.GenomeBuilder.buildGenome(Unknown Source)
at org.gel.mauve.GenomeBuilder.buildGenome(Unknown Source)
at org.gel.mauve.GenomeBuilder.buildGenome(Unknown Source)
at org.gel.mauve.XmfaViewerModel.init(Unknown Source)
at org.gel.mauve.XmfaViewerModel.<init>(Unknown Source)
at org.gel.mauve.ModelBuilder.buildModel(Unknown Source)
at org.gel.mauve.gui.FrameLoader.loadFile(Unknown Source)
at org.gel.mauve.gui.FrameLoader.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: org.biojava.bio.BioError: Unable to initialize RNATools
at org.biojava.bio.seq.RNATools.<clinit>(RNATools.java:126)
at org.biojava.bio.seq.DNATools.<clinit>(DNATools.java:130)
... 14 more
Caused by: org.biojava.bio.BioError: Couldn't parse TranslationTables.xml
at org.biojava.bio.seq.RNATools.loadGeneticCodes(RNATools.java:529)
at org.biojava.bio.seq.RNATools.<clinit>(RNATools.java:124)
... 15 more
Caused by: org.biojava.bio.symbol.IllegalSymbolException: Token his' does not appear as a named symbol in alphabetPROTEIN-TERM'
at org.biojava.bio.seq.io.NameTokenization.parseToken(NameTokenization.java:110)
at org.biojava.bio.seq.RNATools.loadGeneticCodes(RNATools.java:520)
... 16 more</clinit></clinit></clinit></init></init></clinit>