#61 Caught signal 11

[Devina Bhookhun-Seeruttun]

Hi,
I am working on a cluster creating genomes graphs for 20 unknown WGS. Each WGS sequence is (~1x10-6bp) and while aligning the sequence I am having the foloowing errors

I am using linux64/progressiveMauve
[bhookund@n14 ~]$ python3 GenGraph/gengraphTool.py make_genome_graph --seq_file Gengraph/Stec20/stec20.txt --out_file_name output
Running GenGraph Toolkit
Creating genome graph
[OrderedDict([('seq_name', 'stec13'), ('aln_name', 'seq0'), ('seq_path', 'Gengraph/Stec20/stec13/stec13.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec18'), ('aln_name', 'seq1'), ('seq_path', 'Gengraph/Stec20/stec18/stec18.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec24'), ('aln_name', 'seq2'), ('seq_path', 'Gengraph/Stec20/stec24/stec24.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec27'), ('aln_name', 'seq3'), ('seq_path', 'Gengraph/Stec20/stec27/stec27.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec69'), ('aln_name', 'seq4'), ('seq_path', 'Gengraph/Stec20/stec69/stec69.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec76'), ('aln_name', 'seq5'), ('seq_path', 'Gengraph/Stec20/stec76/stec76.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec77'), ('aln_name', 'seq6'), ('seq_path', 'Gengraph/Stec20/stec77/stec77.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec78'), ('aln_name', 'seq7'), ('seq_path', 'Gengraph/Stec20/stec78/stec78.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec83'), ('aln_name', 'seq8'), ('seq_path', 'Gengraph/Stec20/stec83/stec83.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec87'), ('aln_name', 'seq9'), ('seq_path', 'Gengraph/Stec20/stec87/stec87.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec89'), ('aln_name', 'seq10'), ('seq_path', 'Gengraph/Stec20/stec89/stec89.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec91'), ('aln_name', 'seq11'), ('seq_path', 'Gengraph/Stec20/stec91/stec91.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec92'), ('aln_name', 'seq12'), ('seq_path', 'Gengraph/Stec20/stec92/stec92.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec97'), ('aln_name', 'seq13'), ('seq_path', 'Gengraph/Stec20/stec97/stec97.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec98'), ('aln_name', 'seq14'), ('seq_path', 'Gengraph/Stec20/stec98/stec98.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec106'), ('aln_name', 'seq15'), ('seq_path', 'Gengraph/Stec20/stec106/stec106.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec107'), ('aln_name', 'seq16'),('seq_path', 'Gengraph/Stec20/stec107/stec107.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec108'), ('aln_name', 'seq17'), ('seq_path', 'Gengraph/Stec20/stec108/stec108.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec128'), ('aln_name', 'seq18'), ('seq_path', 'Gengraph/Stec20/stec128/stec128.fa'), ('annotation_path', 'NA')]), OrderedDict([('seq_name', 'stec141'), ('aln_name', 'seq19'), ('seq_path', 'Gengraph/Stec20/stec141/stec141.fa'), ('annotation_path', 'NA')])]
Conducting progressiveMauve
Caught signal 11
Cleaning up and exiting!
Temporary files deleted.
progressiveMauve Complete
Traceback (most recent call last):
File "GenGraph/gengraphTool.py", line 124, in <module>
genome_aln_graph = bbone_to_initGraph(bbone_file
Please help.
Thank you
Cheers
Devina</module>