concatenated block sequences are different from original sequences
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koadman
Dear authors,
I used Mauve to align 9 sequences ( downloaded http://hgwdev.sdsc.edu/%7Eanovak/hgvm/MHC/). ref.fa was used as the reference. After I got result file from progressiveMauve, I concatenated block sequences for original sequences and compared them with orignial sequences. I found that lengths of concatenated sequence are correct, but sequences of three of them are different original sequences. Could you please take a look? Thanks!
length wrong bases
GI568335997 76752 50592
GI568335879 4672374 4385
GI568335989 4827813 2940
I found there are RC sequences. My bad. Please close the ticket!