#41 progressiveMauve2.3.1 error

[Joaquim Martins Jr]

Dear colleagues,

I've been trying to run progressiveMauve 2.3.1 (64bits) over 50 bacterial genomes(gbk files) that are closed or in contigs. I always get the following error:

...
Greedy BPE
Scoring with scaled breakpoint penalty: 153418
done
Arrived at 1 intervals
Adding unaligned intervals
addUnalignedIntervals yields 1 intervals
Merging unaligned intervals
Marbling gaps
Propagating descendant breakpoints
descendant 0(89) has 1 intervals
descendant 1(96) has 1 intervals
propagateDescendantBreakpoints yields 1 intervals
Creating ancestral ordering
Previous anchoring score: 1.34304e+09, new anchor score: 1.3387e+09
propagating ancestral breakpoints
performing a gapped alignment

0%..terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

However, when run the same analysis with progressiveMauve2.4, it never ends!!

Could you help me?

Best regards,
Joaquim