installation missing files, ICC compiler

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labas
2010-06-26
2013-01-09
  • labas
    labas
    2010-06-26

    I am not able to install ATLAS  3.8.3 (newest stable release 2009 02-18).
    https://sourceforge.net/projects/math-atlas/files/

    1) My computer has no ICC compiler and The ICC compiler from Intel seems too modern for my proccesor according description.
    I try to use gcc-4.2 instead of ICC, option -C ic gcc-4.2,

    working:/usr/ATLAS#  /opt/pages/ATLAS/configure -b 64 --prefix=/opt/pages/ATLAS -Ss kern /usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg -fPIC --with-netlib-lapack=$/opt/lapack-3.1.1/lapack_LINUX.a
    

    I am getting error:

    Unable to find usable compiler for ICC; abortingMake sure compilers are in your path, and specify good compilers to configure
    

    2) Another error is about missing files:
    /usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or directory

    Full code:

    working:/usr/ATLAS#  /opt/pages/ATLAS/configure -b 64 --prefix=/opt/pages/ATLAS -Ss kern /usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg -fPIC --with-netlib-lapack=$/opt/lapack-3.1.1/lapack_LINUX.a
    make: `xconfig' is up to date.
    ./xconfig -d s /opt/pages/ATLAS/ -d b /usr/ATLAS  -b 64 -Ss kern /usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg -fPIC -Si lapackref 1
    OS configured as Linux (1)
    Assembly configured as GAS_x8632 (1)
    Vector ISA Extension configured as  SSE3 (2,28)
    Architecture configured as  Core2 (15)
    Clock rate configured as 1667Mhz
    Maximum number of threads configured as  2
    Parallel make command configured as '$(MAKE) -j 2'
    Cannot detect CPU throttling.
    rm -f config1.out
    make atlas_run atldir=/usr/ATLAS exe=xprobe_comp args="-v 0 -o atlconf.txt -O 1 -A 15 -Si nof77 0  -C ic 'gcc-4.2' -Fa ic '-fPIC' -C sm '/usr/bin/gcc-4.2' -Fa sm '-fPIC' -C dm '/usr/bin/gcc-4.2' -Fa dm '-fPIC' -C sk '/usr/bin/gcc-4.2' -Fa sk '-fPIC' -C dk '/usr/bin/gcc-4.2' -Fa dk '-fPIC' -Fa xc '-fPIC' -Fa if '-fPIC'  -b 64" \
                    redir=config1.out
    make[1]: Entering directory `/usr/ATLAS'
    cd /usr/ATLAS ; ./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 15 -Si nof77  -C ic 'gcc-4.2' -Fa ic '-fPIC' -C sm '/usr/bin/gcc-4.2' -Fa sm '-fPIC' -C dm '/usr/bin/gcc-4.2' -Fa dm '-fPIC' -C sk '/usr/bin/gcc-4.2' -Fa sk '-fPIC' -C dk '/usr/bin/gcc-4.2' -Fa dk '-fPIC' -Fa xc '-fPIC' -Fa if '-fPIC'  -b 64 > config1.out
    In file included from /usr/include/features.h:354,
                     from /usr/include/stdio.h:28,
                     from /opt/pages/ATLAS//CONFIG/src/backend/comptestC.c:1:
    /usr/include/gnu/stubs.h:9:27: error: gnu/stubs-64.h: No such file or directory
    make[2]: *** [IRunCComp] Error 1
    Unable to find usable compiler for ICC; abortingMake sure compilers are in your path, and specify good compilers to configure
    (see INSTALL.txt or 'configure --help' for details)make[1]: *** [atlas_run] Error 1
    make[1]: Leaving directory `/usr/ATLAS'
    make: *** [IRun_comp] Error 2
    xconfig: /opt/pages/ATLAS//CONFIG/src/config.c:125: ProbeComp: Assertion `!system(ln)' failed.
    /bin/sh: line 1: 24985 Aborted                 ./xconfig -d s /opt/pages/ATLAS/ -d b /usr/ATLAS -b 64 -Ss kern /usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg -fPIC -Si lapackref 1 -D c -DATL_FULL_LAPACK
    xconfig exited with 134
    working:/usr/ATLAS#  /opt/pages/ATLAS/configure -b 64 --prefix=/opt/pages/ATLAS -Ss kern /usr/bin/gcc-4.2 -C ic gcc-4.2 -Fa alg -fPIC --with-netlib-lapack=$/opt/lapack-3.1.1/lapack_LINUX.a
    

    regards,
    gintare statkute