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Cannot insert new gene

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Jason Kwan
2012-02-26
2013-01-28

  • Jason Kwan

    Jason Kwan - 2012-02-26

    Hi Everyone,

    I'm trying to add a new gene to a manatee database - this is an orf that was not annotated by CloVR but I believe is actually a gene based upon other data.  Anyway, when I am in the "edit gene" display for the neighboring gene, I click on the orf and choose to insert gene here.  It fails and I get this message:

    Insertion failed. Please contact the administrator of Manatee.

    I can change annotations to existing genes, so surely this cannot be a mysql permissions issue?

    Thanks again for your help,

    Jason

     

  • Jaysheel Bhavsar

    Jaysheel Bhavsar - 2012-02-28

    Hi Jason,
        Can you check function get_next_locus_id in CGI-BIN/chado_prok_manatee/genome_viewer2/image_library.pm and see if line
         

    and ct.name IN ('transcript', ....)

    contain rRNA in its list if not can you please replace it with 

    and ct.name in  ('transcript', 'tRNA', 'rRNA')

    and see if this fixes the insert gene error.

    Thanks
    Jaysheel

     

  • Jason Kwan

    Jason Kwan - 2012-03-25

    Hi Jaysheel,

    I did as you suggested but I still get the same error.  Do you have any other suggestions for possible fixes?

    Thanks

    Jason

     

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