Activity for Manatee
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Shaun Adkins committed [r8808] on Code
re-adding 24.04 Dockerfile content and preserving 22.04
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fixing various bugs related to bad SQL queries and unhandled undefined variables
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fixing bug with retreiving role IDs (+ some code formatting)
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makefile.pl now adds tdb static web assets
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Makefile.pl now builds in 22.04
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initial commit of Docker-related code. Currently running in mysql issues
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moving filename creation until after manatee obj is created
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fixing some weird sql code
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forgetting how to use Perl
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debug statements
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testing fix
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debug statements
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debug statements
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changing to basename path
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debug statements
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emergency fix for viewing BERs
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emergency fix for viewing BERs
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emergency fix for viewing BERs
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emergency fix for viewing BERs
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debug statement for xml
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adding debug statements to figure out activemq issue
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adding debug statements to figure out activemq issue
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adding debug statements to figure out activemq issue
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adding back some non-password properties
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removing more hidden password fields
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removing hidden input that could expose password in gateway.tt
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fixing offsetLeft issue with null property
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undoing path changes from tdb to tigr-scripts
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reverted URL files back to using tdb contents
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removing the tigr-scripts alias
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printing some testing statements
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printing some testing statements
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printing some testing statements
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printing some testing statements
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removing empty JS file
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reverting previous commit
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adding virtual shared xml param
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turning off executable bit
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changed executable bit of assets that were not loading
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moving files out of the 'tdb' directory into the common area
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moved 'tdb' assets and relinked templates to point to those
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deleting euk_templates since it is unused
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removing unused code packages
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removing unused password variable
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changing jQuery call to use $ shorthand
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btab_display now does not show the full filepath in GET parameter
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removing username and password in GET urls
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adding current directory to lib
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fixing issue with 'our' and 'qw'
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modifications to preserve compatibility with perl 5.26 and 5.28
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changing trusted olive color to a light yellow
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changing MLDBM to BerkeleyDB in hash tieing
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changing MLDBM to BerkeleyDB in hash tieing
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changing MLDBM to BerkeleyDB in hash tieing
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changing MLDBM to BerkeleyDB in hash tieing
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swapping code around for debugging
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disabling some buttons with nonworking functionality
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Jonathan Crabtree committed [r8751]
Fix for regression introduced in r8653.
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Slight modification to avoid disrupting PROSITE hyperlink in case of failed lookup.
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Handle case of failed PROSITE db lookup more gracefully.
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Improve error checking in HMM sorting routine to reduce logged warnings.
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fixing some broken javascript syntax
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fixing some broken javascript syntax
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Fix hashref syntax, some additional compiler warnings.
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Remove compiler warnings.
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Correct undefined value warning.
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undef is not a list operator
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Check system call retval, move header printing back to wrapper script.
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Remove deprecated launcher.cgi and template.
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Keep (unhelpful) BioPerl codon warnings out of web server logs.
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Remove comments referencing BLAST.
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Remove duplicate header, which is printed by chado_aengine_dumper.pl if --cgi_mode=1
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Check success of GET requests, fix double request bug, eliminate undef warnings.
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Clean up some more strict warnings.
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Remove masked subroutine definitions.
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Clean up some warnings.
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Remove duplicate subroutine definition.
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More warnings and Perl 5.22 updates. Can't call split in a void context any more.
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Remove unintended interpolation of output separator, attempt to fix regexes.
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Correct deprecated syntax.
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Correct deprecated syntax.
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Address 'strict' warnings, list-context CGI::param calls.
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Call CGI::Param in scalar context within Coati::Logger constructor.
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James Matsumura committed [r8724]
Round and round we go. Guarantee ChadoManateeDB.pm got the obsolete change.
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Correcting previous fix. Retain 8720 but revert 8721
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Reverting to old UniProt link style. Erasing last commit.
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Updating to fix dead links to UniRef for old Un...
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removing obsolete results from returning. need ...
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reworking GO panel to eliminate drop-down and e...
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more simple changes per MANA-167
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updating logic of combinatorial searches so tha...
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need to update default value of HMM in first se...
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updating links on home page to open in new tab
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copying for staging
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reformatting per MANA-167. Will need to rewrite...
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Manatee released /Manatee_v3r0b1_vdi.tar.gz
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Revamping update searches. Note that new code h...
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updated to output GO features in 'note' tag
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