Recent changes to libraries

libraries modified by Wei Li

Wei Li — Thu, 22 Aug 2019 17:05:57 -0000

--- v8
+++ v9
@@ -8,6 +8,7 @@

 File|Explanation
 ----|-----------
+broadgpp-brunello-library-corrected.txt.zip    |Human [Brunello](https://www.addgene.org/pooled-library/broadgpp-human-knockout-brunello/) genome-wide library developed by Broad Institute
 Human\_GeCKOv2\_Library\_A\_3\_mageck.csv.zip|Human [GeCKO v2](http://www.addgene.org/crispr/libraries/geckov2/) half-library A (can be used in either 1- or 2-plasmid systems)
 Human\_GeCKOv2\_Library\_B\_1\_mageck.csv.zip|Human GeCKO v2 half-library B
 Human\_GeCKOv2\_Library\_combine.csv.zip|Human GeCKO v2 combined library of A and B

libraries modified by Wei Li

Wei Li — Tue, 12 Jan 2016 20:36:35 -0000

--- v7
+++ v8
@@ -17,5 +17,6 @@
 GeCKOv1.txt.zip|GeCKO v1 library file (from the GeCKO [Science paper](http://www.ncbi.nlm.nih.gov/pubmed/24336571))
 human\_sam_library.csv.zip|Human [Synergistic Activation Mediator (SAM)](http://www.addgene.org/crispr/libraries/sam/) pooled library (CRISPRa library), generated by Feng Zhang laboratory.
 yusa\_library.csv.zip|Mouse knockout library generated by [Kosuke Yusa laboratory](http://www.ncbi.nlm.nih.gov/pubmed/24535568).
-tim\_library.txt.zip|Human CRISPR knockout library of 7,000 genes (from [T. Waing Science 2014](http://www.ncbi.nlm.nih.gov/pubmed/24336569)).
+tim\_library.txt.zip|Human CRISPR knockout library of 7,000 genes (from [T. Wang Science 2014](http://www.ncbi.nlm.nih.gov/pubmed/24336569)).
+tim\_science2015\_library.txt.zip|Human CRISPR pooled library of 18,166 genes (from [T.Wang Science 2015](https://www.addgene.org/pooled-library/sabatini-crispr-high-cleavage-activity/)).

libraries modified by Wei Li

Wei Li — Sat, 08 Aug 2015 23:03:22 -0000

--- v6
+++ v7
@@ -17,4 +17,5 @@
 GeCKOv1.txt.zip|GeCKO v1 library file (from the GeCKO [Science paper](http://www.ncbi.nlm.nih.gov/pubmed/24336571))
 human\_sam_library.csv.zip|Human [Synergistic Activation Mediator (SAM)](http://www.addgene.org/crispr/libraries/sam/) pooled library (CRISPRa library), generated by Feng Zhang laboratory.
 yusa\_library.csv.zip|Mouse knockout library generated by [Kosuke Yusa laboratory](http://www.ncbi.nlm.nih.gov/pubmed/24535568).
+tim\_library.txt.zip|Human CRISPR knockout library of 7,000 genes (from [T. Waing Science 2014](http://www.ncbi.nlm.nih.gov/pubmed/24336569)).

libraries modified by Wei Li

Wei Li — Wed, 20 May 2015 19:48:30 -0000

--- v5
+++ v6
@@ -16,4 +16,5 @@
 mouse\_geckov2\_library\_combine.csv.zip|Mouse GeCKO v2 combined library of A and B
 GeCKOv1.txt.zip|GeCKO v1 library file (from the GeCKO [Science paper](http://www.ncbi.nlm.nih.gov/pubmed/24336571))
 human\_sam_library.csv.zip|Human [Synergistic Activation Mediator (SAM)](http://www.addgene.org/crispr/libraries/sam/) pooled library (CRISPRa library), generated by Feng Zhang laboratory.
+yusa\_library.csv.zip|Mouse knockout library generated by [Kosuke Yusa laboratory](http://www.ncbi.nlm.nih.gov/pubmed/24535568).

libraries modified by Wei Li

Wei Li — Fri, 06 Feb 2015 14:32:02 -0000

--- v4
+++ v5
@@ -5,16 +5,15 @@
 For your convenience, we provide a set of library files that are ready to be used in MAGeCK (in the -l/--list-seq option of the count command) in the [libraries](https://sourceforge.net/projects/mageck/files/libraries/) folder. You can also create your own library files, see [sgrna-library-file](https://sourceforge.net/p/mageck/wiki/input/#sgrna-library-file) for more details.

-All the files are downloaded from [GeCKO website](http://www.addgene.org/crispr/libraries/geckov2/) and from the original [Science paper](http://www.ncbi.nlm.nih.gov/pubmed/24336571).

 File|Explanation
 ----|-----------
-Human\_GeCKOv2\_Library\_A\_3\_mageck.csv.zip|Human GeCKO v2 half-library A (can be used in either 1- or 2-plasmid systems)
+Human\_GeCKOv2\_Library\_A\_3\_mageck.csv.zip|Human [GeCKO v2](http://www.addgene.org/crispr/libraries/geckov2/) half-library A (can be used in either 1- or 2-plasmid systems)
 Human\_GeCKOv2\_Library\_B\_1\_mageck.csv.zip|Human GeCKO v2 half-library B
 Human\_GeCKOv2\_Library\_combine.csv.zip|Human GeCKO v2 combined library of A and B
 mouse\_geckov2\_library\_a\_2\_mageck.csv.zip|Mouse GeCKO v2 half-library A (can be used in either 1- or 2-plasmid systems)
 mouse\_geckov2\_library\_b\_1\_mageck.csv.zip|Mouse GeCKO v2 half-library B
 mouse\_geckov2\_library\_combine.csv.zip|Mouse GeCKO v2 combined library of A and B
-GeCKOv1.txt.zip|GeCKO v1 library file (from the Science paper)
+GeCKOv1.txt.zip|GeCKO v1 library file (from the GeCKO [Science paper](http://www.ncbi.nlm.nih.gov/pubmed/24336571))
+human\_sam_library.csv.zip|Human [Synergistic Activation Mediator (SAM)](http://www.addgene.org/crispr/libraries/sam/) pooled library (CRISPRa library), generated by Feng Zhang laboratory.

-

libraries modified by Wei Li

Wei Li — Wed, 10 Dec 2014 02:37:14 -0000

--- v3
+++ v4
@@ -1,4 +1,6 @@
 # Commonly used libraries #
+
+[Download frequently used libraries](https://sourceforge.net/projects/mageck/files/libraries/)

 For your convenience, we provide a set of library files that are ready to be used in MAGeCK (in the -l/--list-seq option of the count command) in the [libraries](https://sourceforge.net/projects/mageck/files/libraries/) folder. You can also create your own library files, see [sgrna-library-file](https://sourceforge.net/p/mageck/wiki/input/#sgrna-library-file) for more details.

@@ -16,4 +18,3 @@
 GeCKOv1.txt.zip|GeCKO v1 library file (from the Science paper)

-

libraries modified by Wei Li

Wei Li — Wed, 10 Dec 2014 02:36:24 -0000

--- v2
+++ v3
@@ -13,4 +13,7 @@
 mouse\_geckov2\_library\_a\_2\_mageck.csv.zip|Mouse GeCKO v2 half-library A (can be used in either 1- or 2-plasmid systems)
 mouse\_geckov2\_library\_b\_1\_mageck.csv.zip|Mouse GeCKO v2 half-library B
 mouse\_geckov2\_library\_combine.csv.zip|Mouse GeCKO v2 combined library of A and B
+GeCKOv1.txt.zip|GeCKO v1 library file (from the Science paper)

+
+

libraries modified by Wei Li

Wei Li — Wed, 10 Dec 2014 02:31:07 -0000

--- v1
+++ v2
@@ -1,6 +1,6 @@
 # Commonly used libraries #

-For your convenience, we provide a set of library files that are ready to be used in MAGeCK (in the -l/--list-seq option of the count command). You can also create your own library files, see [sgrna-library-file](https://sourceforge.net/p/mageck/wiki/input/#sgrna-library-file) for more details.
+For your convenience, we provide a set of library files that are ready to be used in MAGeCK (in the -l/--list-seq option of the count command) in the [libraries](https://sourceforge.net/projects/mageck/files/libraries/) folder. You can also create your own library files, see [sgrna-library-file](https://sourceforge.net/p/mageck/wiki/input/#sgrna-library-file) for more details.

 All the files are downloaded from [GeCKO website](http://www.addgene.org/crispr/libraries/geckov2/) and from the original [Science paper](http://www.ncbi.nlm.nih.gov/pubmed/24336571).
@@ -14,4 +14,3 @@
 mouse\_geckov2\_library\_b\_1\_mageck.csv.zip|Mouse GeCKO v2 half-library B
 mouse\_geckov2\_library\_combine.csv.zip|Mouse GeCKO v2 combined library of A and B

-

libraries modified by Wei Li

Wei Li — Wed, 10 Dec 2014 02:30:10 -0000

Commonly used libraries

For your convenience, we provide a set of library files that are ready to be used in MAGeCK (in the -l/--list-seq option of the count command). You can also create your own library files, see sgrna-library-file for more details.

All the files are downloaded from GeCKO website and from the original Science paper.

File	Explanation
Human_GeCKOv2_Library_A_3_mageck.csv.zip	Human GeCKO v2 half-library A (can be used in either 1- or 2-plasmid systems)
Human_GeCKOv2_Library_B_1_mageck.csv.zip	Human GeCKO v2 half-library B
Human_GeCKOv2_Library_combine.csv.zip	Human GeCKO v2 combined library of A and B
mouse_geckov2_library_a_2_mageck.csv.zip	Mouse GeCKO v2 half-library A (can be used in either 1- or 2-plasmid systems)
mouse_geckov2_library_b_1_mageck.csv.zip	Mouse GeCKO v2 half-library B
mouse_geckov2_library_combine.csv.zip	Mouse GeCKO v2 combined library of A and B