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MACCU (Multi-Array Correlation Computation Utility)
See http://maccu.sourceforge.net/index.html for documents.

Change logs
NEXT version:
Fixed: fixed Graph2GroupList.pl so that node strings composed of multiple gene IDs would be decomposed.
0.80a
Added: script Graph2GroupList.pl for generating *.grouplist files for GO enrichment (ref: https://github.com/wdlingit/cop/wiki/From-ontology-annotation-results-to-enrichment-computation)
Fixed: fix a minor case of not getting absolute path to the jar file in OneStopWrapper.pl.
Fixed: fix a minor case of alias checking in OneStopWrapper.pl.
0.80
Added: script OneStopWrapper.pl that generates FishingClusteringAuto.pl and GraphAdjustAuto.pl and automatically executes them. This enables easy use of the programs.
Added: saving to XGMML files by GraphMakeUp so that output graphs can be easily imported into Cytoscape.
Fixed: a number of fixes that cop user input habits.
0.70
Added: script FishingClusteringAuto.pl for batch fishing/clustering. Edit before use.
Added: script GraphAdjustAuto.pl for batch GraphAdjust (graph-level operation). Edit before use.
Upgrade: multi-configuration of maccu.RelationComputer and maccu.CoExpressFishing, which enables doing multiple clustering/fishing jobs in one execution of the program, saves time of loading expression data.
Upgrade: class graph.Graph was created for Graph objects.
Upgrade: memory-saving expression file readers for fishing/clustering.
Added: -edge option of maccu.GraphMakeUp, set it true for showing edge weights (correlation coefficients).
Added: -ND option of maccu.GraphAdjust for graph union.
0.60a
Fixed: a minor correction for accession look-up problem of capitalization.
0.60
Added: maccu.Edge2Graph for translating tab-delimited files of relationships (edges) into .graph files.
Added: -G option of maccu.GraphAdjust for controlling generation of sub-clusters, defaultly FALSE.
Added: -ND option of maccu.GraphAdjust for node-decomposition, useful for comparing networks made based on array data with networks made based on PPI data.
Fixed: a number of accession look-up problem of capitalization.
0.56
Added: This release note.
Fixed: Some minor typo for description of -I options of some programs.