lp-csic-uab/tcellxtalk Proteomics Code changes

Working on implementation of Beltejar17PhosFetcher class

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

Working on implementation of Beltejar17PhosFetcher class
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Start implementation of Fetcher for Beltejar 2017 phosphorylation dataset

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

Start implementation of Fetcher for Beltejar 2017 phosphorylation dataset
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Small fix in DataBase class (connect() method) to avoid disconnection errors due to MySQL shutting down connections older than X hours in SQLAlchemy connection pool

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

Small fix in DataBase class (connect() method) to avoid disconnection errors due to MySQL shutting down connections older than X hours in SQLAlchemy connection pool
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Some comments

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

Some comments
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Bugfix in filter class Jouy15PhosFetcher : correctly import the regulation

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

Bugfix in filter class Jouy15PhosFetcher : correctly import the regulation
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Workaround for SQLAlchemy errors when Source objects are not linked to an open Session.

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

Workaround for SQLAlchemy errors when Source objects are not linked to an open Session.
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New importer class Jouy15PhosFetcher in filters.py

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

New importer class Jouy15PhosFetcher in filters.py New functions pep_w_mods_mass(), get_mass4mz_charge() and get_mz() in pepprot_func.py Minor changes in db_models.py
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Start implementation of Fetcher for Ahsan 2017 phosphorylation data

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

Start implementation of Fetcher for Ahsan 2017 phosphorylation data
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Refactoring: method PepLikeMixin.is_comodiffied() from tcellxtalk.views.py

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

Refactoring: method PepLikeMixin.is_comodiffied() from tcellxtalk.views.py
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Implemented ProForma format in class PepLikeMixin ( staticmethod seq2proforma() and method as_proforma() )

ogallard — Tue, 30 Jun 2020 13:32:26 -0000

Implemented ProForma format in class PepLikeMixin ( staticmethod seq2proforma() and method as_proforma() )
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