Tree [3481e3] default / History
| File | Date | Author | Commit |
|---|---|---|---|
| docs | 2013-07-27 |
jabianmonux
|
[17b5f0] Merge |
| glade | 2013-08-04 |
jabianmonux
|
[982e8d] tune the gui a bit |
| images | 2010-10-28 |
lpcsicuab
|
[ff1175] Initializacion repository |
| old_scripts | 2013-08-04 |
jabianmonux
|
[f6138e] predict lines a bit more accurately |
| .hgtags | 2013-07-27 |
jabianmonux
|
[9b7b2c] vs.0.9 legacy fastatools |
| INSTALL.txt | 2012-09-25 |
ogallard
|
[586f86] Updated licence information |
| LICENCE.txt | 2010-12-09 |
ogallard
|
[a7c08f] Added README.txt, LICENCE.txt and INSTALL.txt |
| README.md | 2020-07-15 |
ogallard
|
[3481e3] Updated README.md to point to SourceForge repos... |
| README.txt | 2012-09-25 |
ogallard
|
[586f86] Updated licence information |
| decoy.pl | 2012-09-25 |
ogallard
|
[586f86] Updated licence information |
| fastatools.pl | 2013-08-02 |
jabianmonux
|
[36a8ec] refactor directories and start testin |
Read Me
Description
FastaTools is a GUI based, Perl made application that performs several operations to Fasta protein databases (DB).
FastaTools performs four main actions:
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DB exploration: it shows the first 200 lines of the database.
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DB Analysis: the number of lines, proteins and peptides generated after digestion by an enzyme are reported. Five different enzymes are supported at this time, and the user can specify the number of missed cleavages, minimum and maximum masses for peptide generation.
-
Decoy DB generation: a decoy database is generated using the specified DB. Three strategies of decoy generation are supported (reverse, random and pseudo-random). The new DB can be attached to the original.
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DB Search: a simple text or a list of terms can be introduced to be searched inside the DB. The headers or the sequences can be scanned, into three general strategies:
- Search headers to generate a sub-DB in fasta format.
- Search sequences to generate a sub-DB in fasta format.
- Search sequences to generate a peptide-protein pairs list.
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Search sequences to generate a protein-peptide pairs list.
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DB Join: join multiple Fasta databases.
Download
You can download the last version of FastaTools here
.
After downloading the binary installer, you will need to e-mail us at 
to get your free password and unlock the installation program.
Documentation
More documentation and tutorials can be downloaded as a PDF file.
Copyright notice: This software has been produced at the Proteomics Facility CSIC-UAB by David Ovelleiro on the framework of a Spanish Research Project (BIO2004/01788) directed by Dr. Joaquin Abian.
It's under the GNU General Public License (v3) and the source code and binaries are available through the main FastaTools page at SorceForge: http://lp-csic-uab.googlecode.com .
