Lipid Reporter Activity
Modifies csv files with a range of user defined filters.
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clochardm33
Activity for Lipid Reporter
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Lipid Reporter released /Just the Filters/Filter-UnreliableRowv1-0.exe
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clochardM33 committed [520cfe] on Code
11 July
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This is a bug. It is a quirk of the installer and file priviledges. See here for a workaround. https://sourceforge.net/p/lipid-reporter/wiki/Filters%20Not%20Remembered/
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This is a bug. It is a quirk of the installer and file priviledges.
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Filters Not Remembered
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Filters Not Remembered
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Ticket #8
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% Max Abundance isn't right
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This is fixed in the dll version 1.3 There was an error in the ratio calculation. All the numbers were convertred to integers rather than double precision. v1.3 is included in the revised Wrappack 7 which was updated 3 July 2023.
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% Max Abundance isn't right
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% Max Abundance isn't right
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Wrappack 7
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Added Rank Column to PctMaxAbu
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Wrap Pack 6
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Tidy Up
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Output Data
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Welcome
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Welcome
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Welcome
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Page 1
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Page 1
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Input Data
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Page 1
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Page 1
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Page 1
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Page 1
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Filters
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Page 1
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Page 1
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Filter Plugins - Code
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Filter Descriptions
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Filter Descriptions
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Revision to short names
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Updates
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Revision to short names
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clochardM33 committed [6c286e]
Revisions to short names re Ticket #7
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Revision to short names
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These live in TK.LipidMaps.ShortNamePrefix.dll
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Revision to short names
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I'm not a betting man (or woman), but I'd put money on something being wrong with the input file. Probably a line that is different to the header line and somewhere around the 2600th.
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Steven Lai posted a comment on discussion General Discussion
It actually looks like there's a fixed limit on the number of compounds that can be imported. It appears to be ~ 2600 compounds, when using the Group ID's and Rank, though there may be some other limit being reached with the dataset that I'm using. If I remove the Group ID's And Rank filter, though I can import much larger datasets with success.
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Hi again, I think I've begun to isolate the problem. If I try to use "Group IDs and Rank", and one of the required fields has missing values, then it generated the error. In my case, the Description field for some compounds is blank. I'm not sure why, but I'm guessing the database information is empty. I tried to fill them in with Excel using find/replace, but the formatting appears to change during save and renders the file ineffective. I tried using Notepad++ but can't seem to figure out a way...
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Thanks! I will edit the files. I'm not sure where the blank lines are originating, but at least I can get it to work now.
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clochardM33 committed [4eb771]
Ticket #5 fixes
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clochardM33 committed [7f7cb2]
Merge branch 'master' of ssh://git.code.sf.net/p/lipid-reporter/code
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Error out of range message
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It's in Wrap Pack 3
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Updates
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Error out of range message
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Yep. This is because the input has blank lines in it (or some other way in which the number of columns are not the same throughout the file.
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Error out of range message
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This error message is because the input file has blank lines at the end (or somewhere in the middle). A QI output won't have them. Error handling can be added to all filters that have a dependency on this, but for the meantime delete the blank rows and you are away. Use Notepad ++ not Excel.
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Just seen this. This means there is an error in the code not trapping a condition where something is empty. If you can narrow it down at all then this would be a help.
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clochardM33 committed [9a4f5a]
Ticket #5 fixes
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Updates
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Why doesn't the PI filter editor save the in use file?
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The fix is in Wrap Pack 2
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Why doesn't the PI filter editor save the in use file?
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Ok. You are right.
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Why doesn't the PI filter editor save the in use file?
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How to
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How to
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How to
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How to
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Updates
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clochardM33 committed [e9bec0]
More changes
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clochardM33 committed [0917da]
PI Editor development v1.0
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clochardM33 committed [46e372]
As of 10 March
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Wrap Pack 1 - The new name for an old favourite. Tasty.
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Use Short Names on another type of file
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In Wrap Pack 1
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Header and filter names matching
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In Wrap Pack 1
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PC/SM Filter
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In Wrap Pack 1
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Use Short Names on another type of file
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No. The SDF Convert app knows nothing about Lipids and this is a Lipid specific task. Instead there are some changes to the next release that let you do the same thing, but as it is supposed to be. A TSV reader and writer have been added (tab seperated values). SDF to rows outputs tsv files. You need to change the header name in the tsv so that it matches the required input in Lipid Reporter (see the filter info text for details). With this reader and the this change you can apply the filter to the...
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Use Short Names on another type of file
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Header and filter names matching
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