#34 UnsupportedOperationException on E-MEXP-1769

[Adam Faulconbridge]

Produces large numbers of errors of the form:

67399 [pool-733-thread-1] INFO uk.ac.ebi.arrayexpress2.magetab.parser.IDFParser - Starting IDF parsing...
67400 [pool-733-thread-1] INFO uk.ac.ebi.arrayexpress2.magetab.parser.MAGETABParser - Parsed IDF successfully
67400 [pool-733-thread-1] INFO uk.ac.ebi.arrayexpress2.magetab.parser.SDRFParser - Starting SDRF parsing...
java.lang.UnsupportedOperationException: Stored node and node parameter do not reference the same object and therefore require merging - this is not currently supported
at uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractGraph.updateNode(AbstractGraph.java:108)
at uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.ProtocolHandler.readDataFrom(ProtocolHandler.java:226)
at uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.SDRFReadInContextHandler.readFrom(SDRFReadInContextHandler.java:157)
at uk.ac.ebi.arrayexpress2.magetab.parser.SDRFParser.executeReadHandler(SDRFParser.java:386)
at uk.ac.ebi.arrayexpress2.magetab.parser.SDRFParser.access$000(SDRFParser.java:52)
at uk.ac.ebi.arrayexpress2.magetab.parser.SDRFParser$1.call(SDRFParser.java:328)
at uk.ac.ebi.arrayexpress2.magetab.parser.SDRFParser$1.call(SDRFParser.java:326)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:722)
67407 [pool-733-thread-1] ERROR uk.ac.ebi.arrayexpress2.magetab.parser.MAGETABParser - Failed to parse SDRF

[Adam Faulconbridge]

Also E-TABM-10, E-TABM-1033, E-TABM-1088, E-TABM-1140.