From: <ed...@op...> - 2019-12-21 21:42:16
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Hello, I am getting an error with `make check`. I can live with another compilation that I already have, but if you want the debugging information, let me know. ** Compilation set-up of PETSc and libmesh My compilation configuration can be seen here: - PETSc: - https://notabug.org/broncodev/petsc-pkgbuild - commit ed0b0b66dc38da1a2b68be1185ad557d1201c5e6 - main script: https://notabug.org/broncodev/petsc-pkgbuild/src/ed0b0b66dc38da1a2b68be1185ad557d1201c5e6/PKGBUILD - extra dependencies: https://notabug.org/broncodev/petsc-pkgbuild/src/ed0b0b66dc38da1a2b68be1185ad557d1201c5e6/test_optdepends.sh - This results in the following `configure` flags: #+begin_EXAMPLE LDFLAGS=-Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now --prefix=/usr/petsc/linux-c-opt --CXXOPTFLAGS=-O3 --CFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic --CXXFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic --FFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic --FCFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic --F90FLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic --F77FLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic --with-cxx-dialect=C++11 --with-fftw=1 --with-hdf5=1 --with-mpi=1 --with-pic=1 --with-shared-libraries=1 --with-zlib=1 --with-scalar-type=complex --with-hypre=1 --with-mumps=1 --with-fftw=1 --with-hdf5=1 --with-scalapack=1 --with-suitesparse=1 --with-metis=1 --with-parmetis=1 --with-ptscotch=1 --with-ptscotch-lib="[libesmumps.so,libptscotch.so,libptscotcherr.so,libscotch.so,libscotcherr.so,libbz2.so]" --with-ptscotch-include=/usr/include/scotch --with-superlu=1 --with-superlu-lib=-lsuperlu --with-superlu-include=/usr/include/superlu --with-eigen=1 --with-eigen-include=/usr/include/eigen3 --with-openmp=1 --with-hwloc=1 --with-hwloc-pkg-config=/usr/lib/pkgconfig/ --with-cgns=1 --with-png=1 --with-png-pkg-config=/usr/lib/pkgconfig/ --with-med=1 #+end_EXAMPLE - libmesh: https://notabug.org/broncodev/libmesh-pkgbuild - commit 4286225389795cdacec80b1af669f03c2edabb43 - main script: https://notabug.org/broncodev/libmesh-pkgbuild/src/4286225389795cdacec80b1af669f03c2edabb43/PKGBUILD - This results in the following `configure` flags: #+begin_EXAMPLE configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr' '--enable-petsc-hypre-required' '--with-metis=PETSc' '--enable-metaphysicl-required' '--enable-vtk-required' '--enable-curl' '--enable-hdf5' '--enable-complex' '--with-pic' '--enable-mpi' '--enable-fftw' '--enable-shared' '--enable-unique-id' '--enable-march' '--enable-ifem' '--enable-nodeconstraint' 'CXXFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic' 'LDFLAGS=-Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now' 'CPPFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic -D_FORTIFY_SOURCE=2' 'CFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic' 'FCFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic' 'FFLAGS=-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic' 'METHODS=opt oprof dbg' 'PETSC_DIR=/usr/petsc/linux-c-opt' '--enable-dap' '--disable-testsets' 'CXX=mpicxx' 'CC=mpicc' 'F77=mpif77' 'FC=mpif90' 'CPPFLAGS= -fPIC -fopenmp -O3 -march=x86-64 -mtune=generic -D_FORTIFY_SOURCE=2' 'LIBS=-L/lib -lhdf5 -Wl,-rpath,/lib -ldl ' --cache-file=/dev/null --srcdir=. #+end_EXAMPLE ** The error is this: #+begin_EXAMPLE make check-TESTS make[4]: Entering directory '/folder/libmesh/examples/reduced_basis/reduced_basis_ex7' ,*************************************************************** ,* Running Example reduced_basis_ex7: ,* ./example-dbg -online_mode 0 -ksp_type preonly -pc_type lu -pc_factor_mat_solver_type mumps ,*************************************************************** Error: Solver is unknown. WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:-ksp_type value: preonly Option left: name:-online_mode value: 0 Option left: name:-pc_factor_mat_solver_type value: mumps Option left: name:-pc_type value: lu ---------------------------------------------------------------------------- | Reference count information | ---------------------------------------------------------------------------- | N7libMesh4ElemE reference count information: | Creations: 1 | Destructions: 1 | N7libMesh9DofObjectE reference count information: | Creations: 1 | Destructions: 1 ---------------------------------------------------------------------------- FAIL: run.sh ==================================================== 1 of 1 test failed Please report to lib...@li... ==================================================== make[4]: *** [Makefile:1009: check-TESTS] Error 1 make[4]: Leaving directory '/folder/libmesh/examples/reduced_basis/reduced_basis_ex7' make[3]: *** [Makefile:1136: check-am] Error 2 make[3]: Leaving directory '/folder/libmesh/examples/reduced_basis/reduced_basis_ex7' make[2]: *** [Makefile:1138: check] Error 2 make[2]: Leaving directory '/folder/libmesh/examples/reduced_basis/reduced_basis_ex7' make[1]: *** [Makefile:727: check-recursive] Error 1 make[1]: Leaving directory '/folder/libmesh/examples' make: *** [Makefile:31749: check-recursive] Error 1 #+end_EXAMPLE If you need more information, please, let me know ------------------------------------------------- This free account was provided by VFEmail.net - report spam to ab...@vf... 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