Re: [Libmesh-users] problems during installation

[John P. <jwp...@gm...>]

This issue is fixed in 1.2.1 which has an upgraded netcdf.


> On Dec 19, 2017, at 4:07 PM, Michael Povolotskyi <mpo...@pu...> wrote:
> 
> Dear Libmesh support team,
> 
> I'm installing libmesh on a new PC with Fedora, and I have got the following error:
> 
> make[5]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/liblib'
> make[4]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/liblib'
> Making install in ncgen3
> make[4]: Entering directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/ncgen3'
>   CCLD     ncgen3
> ../liblib/.libs/libnetcdf.so: undefined reference to `H5Pset_fapl_mpiposix'
> collect2: error: ld returned 1 exit status
> make[4]: *** [Makefile:491: ncgen3] Error 1
> make[4]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/ncgen3'
> make[3]: *** [Makefile:610: install-recursive] Error 1
> make[3]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4'
> make[2]: *** [Makefile:978: install-recursive] Error 1
> make[2]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib'
> make[1]: *** [Makefile:29051: install-recursive] Error 1
> make[1]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0'
> make: *** [Makefile.openmpi:28: build] Error 2
> 87.934u 15.745s 0:55.97 185.2%  0+0k 51736+664688io 65pf+0w
> 
> I googled it, looks like it is a known issue, but I do not know how to proceed. Can I simply avoid netcdf build?
> 
> I attach my configuration log.
> 
> Thank you,
> 
> Michael.
> 
> 
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