From: Michael P. <mpo...@pu...> - 2017-12-19 23:07:48
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Dear Libmesh support team, I'm installing libmesh on a new PC with Fedora, and I have got the following error: make[5]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/liblib' make[4]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/liblib' Making install in ncgen3 make[4]: Entering directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/ncgen3' CCLD ncgen3 ../liblib/.libs/libnetcdf.so: undefined reference to `H5Pset_fapl_mpiposix' collect2: error: ld returned 1 exit status make[4]: *** [Makefile:491: ncgen3] Error 1 make[4]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4/ncgen3' make[3]: *** [Makefile:610: install-recursive] Error 1 make[3]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib/netcdf/v4' make[2]: *** [Makefile:978: install-recursive] Error 1 make[2]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0/contrib' make[1]: *** [Makefile:29051: install-recursive] Error 1 make[1]: Leaving directory '/home/mpovolot/Work/repo/libs/libmesh/openMPI/libmesh-1.2.0' make: *** [Makefile.openmpi:28: build] Error 2 87.934u 15.745s 0:55.97 185.2% 0+0k 51736+664688io 65pf+0w I googled it, looks like it is a known issue, but I do not know how to proceed. Can I simply avoid netcdf build? I attach my configuration log. Thank you, Michael. |