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Re: [Libmesh-users] Using Ubuntu, Configuring with Petsc, Specified PETSC_DIR and PETSC_ARCH, but petsc, triangle, tetgen not found?
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From: Roy S. <roy...@ic...> - 2017-11-26 21:45:33
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On Sun, 26 Nov 2017, Zack Vitoh wrote: > Sorry about that, I figured it out, I'll post the solution in a bit. I'm waiting anxiously! I added the configuration tests myself to auto-detect Debian/Ubuntu/etc PETSC installation, years ago, but I stopped using it regularly shortly afterward, and I only recently tried it out with a new laptop and discovered it wasn't working for me... --- Roy > On Sat, Nov 25, 2017 at 12:44 PM, Zack Vitoh <jan...@gm...> wrote: > >> Hello again, >> >> Sorry to be somewhat needy, but I am using Ubuntu, and configuring with >> Petsc. I specified PETSC_DIR and PETSC_ARCH, but after configuring, petsc, >> triangle, tetgen are not found? >> >> For completeness, here are the contents of my do_configure file. I (chmod >> +x)'ed this and run, from ~/src: >> sudo git clone (libmesh git location) >> cd libmesh >> sudo ./do_configure >> >> And the resulting summary is: >> >> >> ----------------------------------- SUMMARY ------------------------------ >> ----- >> >> Package version.................... : libmesh-1.3.0-pre >> >> C++ compiler type.................. : gcc5 >> C++ compiler....................... : mpicxx >> C compiler......................... : mpicc >> Fortran compiler................... : mpif90 >> Build Methods...................... : dbg devel opt >> >> CPPFLAGS...(dbg)................... : -DDEBUG -D_GLIBCXX_DEBUG >> -D_GLIBCXX_DEBUG_PEDANTIC >> CXXFLAGS...(dbg)................... : -std=gnu++11 -O0 >> -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused >> -Wpointer-arith -Wformat -Wparentheses -Woverloaded-virtual >> -Wno-variadic-macros -fopenmp -std=gnu++11 >> CFLAGS.....(dbg)................... : -g -Wimplicit -fopenmp >> >> CPPFLAGS...(devel)................. : >> CXXFLAGS...(devel)................. : -std=gnu++11 -O2 >> -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused >> -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops >> -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization >> -Wno-variadic-macros -fopenmp -std=gnu++11 >> CFLAGS.....(devel)................. : -O2 -g -Wimplicit -funroll-loops >> -fstrict-aliasing -fopenmp >> >> CPPFLAGS...(opt)................... : -DNDEBUG >> CXXFLAGS...(opt)................... : -std=gnu++11 -O2 >> -felide-constructors -funroll-loops -fstrict-aliasing >> -Wdisabled-optimization -Wno-variadic-macros -fopenmp -std=gnu++11 >> CFLAGS.....(opt)................... : -O2 -funroll-loops >> -fstrict-aliasing -fopenmp >> >> Install dir........................ : /opt/libmesh-master >> Build user......................... : root >> Build host......................... : Harmony >> Build architecture................. : x86_64-unknown-linux-gnu >> Git revision....................... : cf5616c3908f9f221b25b469b30aad >> 9d279511a7 >> >> Library Features: >> library warnings................. : yes >> library deprecated code support.. : yes >> adaptive mesh refinement......... : yes >> blocked matrix/vector storage.... : no >> complex variables................ : yes >> example suite.................... : yes >> ghosted vectors.................. : yes >> high-order shape functions....... : yes >> unique-id support................ : yes >> id size (boundaries)............. : 2 bytes >> id size (dofs)................... : 4 bytes >> id size (unique)................. : 8 bytes >> id size (processors)............. : 2 bytes >> id size (subdomains)............. : 2 bytes >> infinite elements................ : yes >> Dirichlet constraints............ : yes >> node constraints................. : yes >> parallel mesh.................... : yes >> performance logging.............. : yes >> periodic boundary conditions..... : yes >> reference counting............... : yes >> shape function 2nd derivatives... : yes >> stack trace files................ : yes >> track node valence............... : yes >> variational smoother............. : yes >> xdr binary I/O................... : yes >> >> Optional Packages: >> boost............................ : yes >> capnproto........................ : no >> cppunit.......................... : no >> curl............................. : no >> eigen............................ : yes >> exodus........................... : yes >> version....................... : v5.22 >> fparser.......................... : yes >> build from version............ : release >> glpk............................. : no >> gmv.............................. : yes >> gzstream......................... : yes >> hdf5............................. : no >> laspack.......................... : no >> libhilbert....................... : yes >> metis............................ : yes >> mpi.............................. : yes >> nanoflann........................ : yes >> nemesis.......................... : yes >> version....................... : v5.22 >> netcdf........................... : yes >> version....................... : 4 >> nlopt............................ : no >> parmetis......................... : yes >> petsc............................ : no >> qhull............................ : yes >> sfcurves......................... : no >> slepc............................ : no >> thread model..................... : pthread >> c++ rtti ........................ : yes >> tecio............................ : yes >> tecplot...(vendor binaries)...... : no >> tetgen........................... : no >> triangle......................... : no >> trilinos......................... : yes >> AztecOO....................... : >> NOX........................... : >> ML............................ : >> Tpetra........................ : >> DTK........................... : >> Ifpack........................ : >> Epetra........................ : >> EpetraExt..................... : >> vtk.............................. : yes >> version....................... : 6.2.0 >> >> libmesh_optional_INCLUDES........ : -I/usr/include/eigen3 >> -I/usr/include/vtk-6.2 -I/usr/include/mpi -I/usr/include >> >> libmesh_optional_LIBS............ : -lvtkIOCore-6.2 -lvtkCommonCore-6.2 >> -lvtkCommonDataModel-6.2 -lvtkFiltersCore-6.2 -lvtkIOXML-6.2 >> -lvtkImagingCore-6.2 -lvtkIOImage-6.2 -lvtkImagingMath-6.2 >> -lvtkIOParallelXML-6.2 -lvtkParallelMPI-6.2 -lvtkParallelCore-6.2 -lz -lmpi >> -L/usr/lib/vtk-6.2 -L/usr/lib >> >> ------------------------------------------------------------ >> ------------------- >> Configure complete, now type 'make' and then 'make install'. >> >> I actually don't recall installing trilinos, but installed triangle and >> tetgen with synaptic package manager. I specified the tetgen include and >> header, so expected these to be found, but they were not? >> >> I spoke with others who specified PETSC_DIR and PETSC_ARCH, and so used >> their process, but mine is not found? >> >> This is somewhat of a basic question, so if anyone could help I'd really >> appreciate it! >> > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______________________________________________ > Libmesh-users mailing list > Lib...@li... > https://lists.sourceforge.net/lists/listinfo/libmesh-users > > |
