Re: [Libmesh-users] Using Ubuntu, Configuring with Petsc, Specified PETSC_DIR and PETSC_ARCH, but petsc, triangle, tetgen not found?

[Zack V. <jan...@gm...>]

Sorry about that, I figured it out, I'll post the solution in a bit.

On Sat, Nov 25, 2017 at 12:44 PM, Zack Vitoh <jan...@gm...> wrote:

> Hello again,
>
> Sorry to be somewhat needy, but I am using Ubuntu, and configuring with
> Petsc. I specified PETSC_DIR and PETSC_ARCH, but after configuring,  petsc,
> triangle, tetgen are not found?
>
> For completeness, here are the contents of my do_configure file.  I (chmod
> +x)'ed this and run, from ~/src:
> sudo git clone (libmesh git location)
> cd libmesh
> sudo ./do_configure
>
> And the resulting summary is:
>
>
> ----------------------------------- SUMMARY ------------------------------
> -----
>
> Package version.................... : libmesh-1.3.0-pre
>
> C++ compiler type.................. : gcc5
> C++ compiler....................... : mpicxx
> C compiler......................... : mpicc
> Fortran compiler................... : mpif90
> Build Methods...................... : dbg devel opt
>
> CPPFLAGS...(dbg)................... : -DDEBUG -D_GLIBCXX_DEBUG
> -D_GLIBCXX_DEBUG_PEDANTIC
> CXXFLAGS...(dbg)................... : -std=gnu++11 -O0
> -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused
> -Wpointer-arith -Wformat -Wparentheses -Woverloaded-virtual
> -Wno-variadic-macros -fopenmp -std=gnu++11
> CFLAGS.....(dbg)................... : -g -Wimplicit -fopenmp
>
> CPPFLAGS...(devel)................. :
> CXXFLAGS...(devel)................. : -std=gnu++11 -O2
> -felide-constructors -g -pedantic -W -Wall -Wextra -Wno-long-long -Wunused
> -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops
> -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization
> -Wno-variadic-macros -fopenmp -std=gnu++11
> CFLAGS.....(devel)................. : -O2 -g -Wimplicit -funroll-loops
> -fstrict-aliasing -fopenmp
>
> CPPFLAGS...(opt)................... : -DNDEBUG
> CXXFLAGS...(opt)................... : -std=gnu++11 -O2
> -felide-constructors -funroll-loops -fstrict-aliasing
> -Wdisabled-optimization -Wno-variadic-macros -fopenmp -std=gnu++11
> CFLAGS.....(opt)................... : -O2 -funroll-loops
> -fstrict-aliasing -fopenmp
>
> Install dir........................ : /opt/libmesh-master
> Build user......................... : root
> Build host......................... : Harmony
> Build architecture................. : x86_64-unknown-linux-gnu
> Git revision....................... : cf5616c3908f9f221b25b469b30aad
> 9d279511a7
>
> Library Features:
>   library warnings................. : yes
>   library deprecated code support.. : yes
>   adaptive mesh refinement......... : yes
>   blocked matrix/vector storage.... : no
>   complex variables................ : yes
>   example suite.................... : yes
>   ghosted vectors.................. : yes
>   high-order shape functions....... : yes
>   unique-id support................ : yes
>   id size (boundaries)............. : 2 bytes
>   id size (dofs)................... : 4 bytes
>   id size (unique)................. : 8 bytes
>   id size (processors)............. : 2 bytes
>   id size (subdomains)............. : 2 bytes
>   infinite elements................ : yes
>   Dirichlet constraints............ : yes
>   node constraints................. : yes
>   parallel mesh.................... : yes
>   performance logging.............. : yes
>   periodic boundary conditions..... : yes
>   reference counting............... : yes
>   shape function 2nd derivatives... : yes
>   stack trace files................ : yes
>   track node valence............... : yes
>   variational smoother............. : yes
>   xdr binary I/O................... : yes
>
> Optional Packages:
>   boost............................ : yes
>   capnproto........................ : no
>   cppunit.......................... : no
>   curl............................. : no
>   eigen............................ : yes
>   exodus........................... : yes
>      version....................... : v5.22
>   fparser.......................... : yes
>      build from version............ : release
>   glpk............................. : no
>   gmv.............................. : yes
>   gzstream......................... : yes
>   hdf5............................. : no
>   laspack.......................... : no
>   libhilbert....................... : yes
>   metis............................ : yes
>   mpi.............................. : yes
>   nanoflann........................ : yes
>   nemesis.......................... : yes
>      version....................... : v5.22
>   netcdf........................... : yes
>      version....................... : 4
>   nlopt............................ : no
>   parmetis......................... : yes
>   petsc............................ : no
>   qhull............................ : yes
>   sfcurves......................... : no
>   slepc............................ : no
>   thread model..................... : pthread
>   c++ rtti ........................ : yes
>   tecio............................ : yes
>   tecplot...(vendor binaries)...... : no
>   tetgen........................... : no
>   triangle......................... : no
>   trilinos......................... : yes
>      AztecOO....................... :
>      NOX........................... :
>      ML............................ :
>      Tpetra........................ :
>      DTK........................... :
>      Ifpack........................ :
>      Epetra........................ :
>      EpetraExt..................... :
>   vtk.............................. : yes
>      version....................... : 6.2.0
>
>   libmesh_optional_INCLUDES........ : -I/usr/include/eigen3
> -I/usr/include/vtk-6.2 -I/usr/include/mpi -I/usr/include
>
>   libmesh_optional_LIBS............ : -lvtkIOCore-6.2 -lvtkCommonCore-6.2
> -lvtkCommonDataModel-6.2 -lvtkFiltersCore-6.2 -lvtkIOXML-6.2
> -lvtkImagingCore-6.2 -lvtkIOImage-6.2 -lvtkImagingMath-6.2
> -lvtkIOParallelXML-6.2 -lvtkParallelMPI-6.2 -lvtkParallelCore-6.2 -lz -lmpi
> -L/usr/lib/vtk-6.2 -L/usr/lib
>
> ------------------------------------------------------------
> -------------------
> Configure complete, now type 'make' and then 'make install'.
>
> I actually don't recall installing trilinos, but installed triangle and
> tetgen with synaptic package manager.  I specified the tetgen include and
> header, so expected these to be found, but they were not?
>
> I spoke with others who specified PETSC_DIR and PETSC_ARCH, and so used
> their process, but mine is not found?
>
> This is somewhat of a basic question, so if anyone could help I'd really
> appreciate it!
>