File	Date	Author	Commit
.settings	2015-09-02	cidieffe	[56a2df] Reading SAM/BAM position and size!
docs	2016-05-12	Cristian Del Fabbro	[00db96] if std::regex doesn't work properly, falling ba...
include	2016-11-03	cidieffe	[ed2047] Suggestions by CLANG
m4	2016-04-28	cidieffe	[76a3d7] updated boost search scripts
maintenance	2016-04-29	cidieffe	[ac6f1a] Added clang-tidy (formerly know as còang-modern...
src	2016-11-16	cidieffe	[204478] bugfix
tests	2016-11-03	cidieffe	[ed2047] Suggestions by CLANG
.autotools	2016-10-26	cidieffe	[463189] autotools
.cproject	2015-10-12	cidieffe	[cb4487] backwards test
.hgignore	2015-10-27	cidieffe	[83f93f] Compiler upgrade
.hgtags	2015-01-16	cidieffe	[db0a19] new version
.project	2013-02-20	cidieffe	[30d8a8] Initial import
AUTHORS	2014-10-10	cidieffe	[d1654e] Now we can compile with C++11 standard!
COPYING	2013-02-20	cidieffe	[30d8a8] Initial import
ChangeLog	2015-06-22	cidieffe	[868523] Cristian Del Fabbro <cristian.delfabbro@...>
INSTALL	2013-02-20	cidieffe	[30d8a8] Initial import
Makefile.am	2015-10-09	cidieffe	[e0d5fd] my first test case
Makefile.in	2016-05-12	Cristian Del Fabbro	[00db96] if std::regex doesn't work properly, falling ba...
NEWS	2013-02-20	cidieffe	[30d8a8] Initial import
README	2015-10-27	cidieffe	[83f93f] Compiler upgrade
aclocal.m4	2016-04-28	cidieffe	[b23de8] updated to Ubuntu 16.04
compile	2013-02-20	cidieffe	[30d8a8] Initial import
config.guess	2013-02-20	cidieffe	[30d8a8] Initial import
config.sub	2013-02-20	cidieffe	[30d8a8] Initial import
configure	2016-05-18	cidieffe	[e6e21e] ok
configure.ac	2016-05-18	cidieffe	[e6e21e] ok
depcomp	2013-02-20	cidieffe	[30d8a8] Initial import
install-sh	2013-02-20	cidieffe	[30d8a8] Initial import
libbiocpp.pc.in	2015-01-16	cidieffe	[db0a19] new version
ltmain.sh	2013-02-20	cidieffe	[30d8a8] Initial import
missing	2013-02-20	cidieffe	[30d8a8] Initial import

Read Me

LIBBIOCPP

The aim is to have different efficient programs that perform simple but powerful tasks for NGS data. The implementation is divided in two parts: the core algorithms and data structures are implemented in a library called "libbiocpp".
This last is an open source library written in C++11 that can be easily adapted to be used and extended and it is independent with respect to the final user objectives. The tools in "ngs-suite" take advantage of the library to solve user-oriented problems like fastq/bam statistics, data filtering, computing coverage profiles and so on.

"libbiocpp" can be downloaded from http://libbiocpp.sf.net
"ngs-suite" can be downloaded from http://ngs-suite.sf.net

================
= INSTALLATION =
================

Prerequisite are:
- C++11 compiler (tested with GNU gcc/g++ >= 4.9.0 and CLANG >= 3.6.0)
- BOOST library >= 1.41.0

Then, just run:

./configure
make
make install

That's all! Enjoy LIBBIOCPP!

=================
= DOCUMENTATION =
=================

If you want to build and install documentation, run (after the "./configure" step!):

cd docs
make
make install