Meaning of the 0 0 values at the end of phased data lines in OrderMarkers2 output
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Hi Pasi,
I'm working with the output from OrderMarkers2 in Lep-MAP3 and trying to better understand the structure of the data. At the end of each marker line-after the phased genotype strings-there are two values like 0 0. Here's a snippet for context:
31373 0.000 0.000 ( --,--;--,--;...;AC,-- ) 01010101... 0 0
I couldn't find a clear explanation in the documentation-could someone clarify what these 0 0 values represent? Are they related to recombination counts, phasing quality, or something else?
Thanks in advance!
Jessica
Dear Jessica,
Thank you for your question.
These two number are just the number of male and female recombinations between this marker and the previous marker. There are two numbers for each family.
Cheers,
Pasi