Lep-Anchor Discussion

Linkage map guided genome anchoring

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Topic	Posts	Views	Last Post
Query about cuts2paf.awk and processing 10x BAM files By Hongbo WANG on Sat Aug 24, 2024 04:55 AM	2	77	By Pasi Rastas on Thu Aug 29, 2024 07:04 AM
Messy Marey Map By Tami Leanne Hildahl on Fri Jan 06, 2023 06:35 AM	16	322	By Pasi Rastas on Wed Mar 22, 2023 08:38 AM
How to anchor more scaffolds By Yutang Chen on Thu Aug 26, 2021 08:43 AM	3	176	By Yutang Chen on Tue Aug 31, 2021 07:42 PM
Horzontal bands in mareymaps By Pavel Dimens on Fri Apr 30, 2021 04:53 PM	2	140	By Pasi Rastas on Sun May 02, 2021 09:59 AM
scaffolds not in agp files By Pavel Dimens on Tue Apr 27, 2021 01:21 AM	3	132	By Pavel Dimens on Tue Apr 27, 2021 06:17 PM
Order contigs in final.fasta By Anna Orteu on Fri Feb 26, 2021 05:53 PM	12	185	By Pasi Rastas on Wed Mar 10, 2021 08:07 AM
Incorporate existing .agp for draft assembly By Joanna Rifkin on Wed Feb 03, 2021 03:17 PM	23	332	By Pasi Rastas on Mon Mar 08, 2021 01:07 PM
Recombination Distance By Emma Berdan on Fri Feb 12, 2021 03:24 PM	4	122	By Pasi Rastas on Mon Feb 15, 2021 02:22 PM
How long does makefasta.awk typically take? By Matt Wersebe on Wed Feb 10, 2021 10:11 PM	3	113	By Matt Wersebe on Thu Feb 11, 2021 11:02 PM
Input File Formats By Matt Wersebe on Wed Feb 10, 2021 06:45 PM	2	135	By Matt Wersebe on Wed Feb 10, 2021 07:44 PM
Thoughts on troubleshooting? By Joanna Rifkin on Thu Dec 03, 2020 10:09 PM	21	343	By Pasi Rastas on Mon Jan 25, 2021 04:36 PM
After iterating PlaceAndOrientContigs, nothing is left By Joanna Rifkin on Thu Nov 26, 2020 05:03 PM	3	202	By Joanna Rifkin on Tue Dec 01, 2020 09:30 PM
Looser LM3 scale parameter, higher LA orientated rate. By Kun on Fri Jul 31, 2020 10:23 AM	3	137	By Kun on Thu Aug 13, 2020 07:09 AM
Some questions about using Lep-Anchor. By Kun on Sun Jul 26, 2020 01:29 PM	2	195	By Pasi Rastas on Mon Aug 03, 2020 01:22 PM
Problem with HaploMerger2 By Israel Guerrero Cózar on Tue Mar 10, 2020 04:24 PM	9	556	By Pasi Rastas on Thu Jun 11, 2020 12:47 PM
[CleanMap] java.lang.NumberFormatException: For input string: "pos" By Pavel Dimens on Mon Apr 20, 2020 08:05 PM	3	109	By Pavel Dimens on Tue Apr 21, 2020 08:45 PM
Remove non-informative markers in post.call.gz? By Joanna Rifkin on Wed Apr 15, 2020 01:16 PM	3	172	By Joanna Rifkin on Mon Apr 20, 2020 06:20 PM
Java exceptions in PlaceAndOrientContigs By Joanna Rifkin on Wed Mar 11, 2020 03:43 PM	12	391	By Pasi Rastas on Tue Mar 24, 2020 07:49 AM
Compilation problem By Israel Guerrero Cózar on Fri Mar 06, 2020 10:57 AM	5	95	By Israel Guerrero Cózar on Fri Mar 06, 2020 02:31 PM
Chimeric contigs By molinier on Thu Feb 27, 2020 07:47 PM	5	243	By Pasi Rastas on Tue Mar 03, 2020 12:25 PM
Bed file format? By Joanna Rifkin on Wed Feb 19, 2020 06:42 PM	4	240	By Joanna Rifkin on Thu Feb 27, 2020 10:59 PM

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