LDx Wiki
LDx uses approximate ML to estimate linkage from pooled NGS data
Brought to you by:
affeder
Description:
Example data are simulated short reads generated from merged DGRP (http://dgrp.gnets.ncsu.edu/) chromosome 2R FASTA files. Simulated short reads were generated with samtools wgsim (http://samtools.sourceforge.net/) to an expected coverage of 20X. Example data provided here are short reads covering two nearby SNPs on chromosome 2R at positions 12,121,353 and 12,121,380.