Activity for LAMSA

  • <REDACTED> committed [167b2f]

    Add cigar msg.

  • <REDACTED> committed [d3dfb9]

    Finish bntseq and fragcluster(2013/9/21)

  • <REDACTED> committed [e1002c]

    Initial commit

  • <REDACTED> committed [1d491d]

    Fix frag_cluster

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    Fix the connection with SW-extending

  • <REDACTED> committed [9d73ab]

    Add SW-extending files...

  • <REDACTED> committed [9c42a8]

    Fix a bug of boundary-repair

  • <REDACTED> committed [05a8d5]

    fix an error in sam_parse

  • <REDACTED> committed [797b7c]

    add funcion: cut-cigar

  • <REDACTED> committed [47815b]

    fix a bug

  • <REDACTED> committed [0b8140]

    Main-Line AND Two-End

  • <REDACTED> committed [6cfc58]

    add sam_parse

  • <REDACTED> committed [2750dc]

    xxxx

  • <REDACTED> committed [3c311e]

    add GEM option

  • <REDACTED> committed [57148b]

    same2last

  • <REDACTED> committed [ac171f]

    fix bug in cigar-merge

  • <REDACTED> committed [5d833d]

    handle 'overlap-ins' case

  • <REDACTED> committed [63cf91]

    fix a small bug on seed-clustering

  • <REDACTED> committed [ade9cb]

    fix one bug

  • <REDACTED> committed [8e2d2b]

    fix a bug in ksw_extend_core

  • <REDACTED> committed [381650]

    'overlap-ins' finished

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    Find SVs

  • <REDACTED> committed [3c2966]

    fix some small bugs

  • <REDACTED> committed [39734a]

    fix a bug in extend_c

  • <REDACTED> committed [bc1452]

    index ref instead of read seq in 'hash-split-ma...

  • <REDACTED> committed [ad76e0]

    'overlap-ins' in [hash-split-mapping] (unfinished)

  • <REDACTED> committed [3c1963]

    Add cigar msg.

  • <REDACTED> committed [f1f8d4]

    SV breakpoints analyze

  • <REDACTED> committed [9954a7]

    Fix some mem-leak bugs

  • <REDACTED> committed [3493e5]

    modify ksw_extend

  • <REDACTED> committed [32b3c7]

    fix some bugs

  • <REDACTED> committed [e7b8ea]

    modify 'merge_cigar'

  • <REDACTED> committed [fadb8b]

    Fix some warnings and potential bugs.

  • <REDACTED> committed [5a6306]

    1.Use 'Tree-pruning' in DP

  • <REDACTED> committed [68463e]

    fix bugs in gem_parse

  • <REDACTED> committed [b25d84]

    boundary-repair has some problems

  • <REDACTED> committed [bfb204]

    new .gitignore

  • <REDACTED> committed [3854b4]

    Main-line and combine

  • <REDACTED> committed [7bd271]

    modify DP strategy of frag-dp

  • <REDACTED> committed [20d64b]

    fix an error in trigger-setting

  • <REDACTED> committed [2dbd58]

    add line-trigger

  • <REDACTED> committed [446899]

    add ksw_bi_extend

  • <REDACTED> committed [376388]

    add new parameter mechanism

  • <REDACTED> committed [9e2a29]

    fix bugs

  • <REDACTED> committed [278fbc]

    use 'ksw_extend' to fulfill extension

  • <REDACTED> committed [1c2d2d]

    add bwt_aln(2)

  • <REDACTED> committed [dfd824]

    delete split-match in hash-mapping

  • <REDACTED> committed [805ec7]

    writing cigar-merge...

  • <REDACTED> committed [e9d4fc]

    multi-res for duplication regions

  • <REDACTED> committed [b07b2d]

    new .gitignore

  • <REDACTED> committed [56150f]

    fix bugs in ksw_extend2()

  • <REDACTED> committed [169fa2]

    xxx

  • <REDACTED> committed [8d9ad3]

    add bwt_aln

  • <REDACTED> committed [632177]

    Merge branch 'master' of https://github.com/gao...

  • <REDACTED> committed [b13b1e]

    split hash map for SV

  • <REDACTED> committed [3998d6]

    multi-SV allowed split-mapping

  • <REDACTED> committed [029c0f]

    fix errors in trigger-pulling

  • <REDACTED> committed [b63afb]

    fix a bug in merge-cigar

  • <REDACTED> committed [3ff6ec]

    fix some git error

  • <REDACTED> committed [1b6b4f]

    finish hash-split-map

  • <REDACTED> committed [4eb67e]

    first commit for Best Coverage and Connect

  • <REDACTED> committed [4afb09]

    Finish frag_extend(extend intervals and seed)

  • <REDACTED> committed [cedefa]

    unify codes where _push_cigar() is used

  • <REDACTED> committed [325351]

    fix bugs in sw_extend

  • <REDACTED> committed [089f9e]

    add [cigar_gen] in 'ksw_extend'

  • <REDACTED> committed [dd9ddf]

    add zdrop to ksw_extend

  • <REDACTED> committed [b12c7e]

    fix [bwt_aln]

  • <REDACTED> committed [12ebea]

    little changes

  • <REDACTED> committed [53bc37]

    Find SV

  • <REDACTED> committed [aa5b17]

    multi-lines' format result

  • <REDACTED> committed [165105]

    fix hash-split-map bugs

  • <REDACTED> committed [370fac]

    add MEM strategy in frag-dp

  • <REDACTED> committed [5b5c76]

    fix a small bug of mem realloc

  • <REDACTED> committed [ae68a6]

    fix a bug in multi-line-dp

  • <REDACTED> committed [ce2eec]

    [hash_split_map] replace 'ksw_global' with 'ksw...

  • <REDACTED> committed [3992e9]

    'overlap-ins' in [hash-split-mapping]

  • <REDACTED> committed [b2fe54]

    Writing cigar-merge (2)...

  • <REDACTED> committed [3c6a9c]

    Rewrite the "path_dp"

  • <REDACTED> committed [bdf5fc]

    little modify for output

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    bug exists

  • <REDACTED> committed [f85b55]

    modify some parameter message

  • <REDACTED> committed [f9f1cc]

    modify 'bwt_aln'

  • <REDACTED> committed [a1c997]

    restrict line-merge, set extend-boundary uniformly

  • <REDACTED> committed [32f401]

    remain_line_DP(bugs)

  • <REDACTED> committed [83a018]

    modifying re-DP for remain-regions

  • <REDACTED> committed [2701e9]

    polish

  • <REDACTED> committed [c7f726]

    higher efficiency with multi-thread option

  • <REDACTED> committed [fad13d]

    coding 'bwt_aln' ...

  • <REDACTED> committed [4aa73c]

    Revert "remain_line_DP(bugs)"

  • <REDACTED> committed [d7b4e6]

    add min-heap in path-filtering

  • <REDACTED> committed [95cddd]

    limit the length of remain-regs

  • <REDACTED> committed [671142]

    Revert "Revert "1. polish with parameters""

  • <REDACTED> committed [c2d4d9]

    Update README.md

  • <REDACTED> committed [42ec66]

    Update README.md

  • <REDACTED> committed [69c11e]

    dev for pthread

  • <REDACTED> committed [c6cd2a]

    modify res_filter/output

  • <REDACTED> committed [303b51]

    new strategy dealing with overlapped-ins

  • <REDACTED> committed [3a1740]

    Revert "1. polish with parameters"

  • <REDACTED> committed [5c20fc]

    1. modify [sw_mid_fix]

  • <REDACTED> committed [36ebc9]

    replace 'left/right_bound' with 'ksw_extend'

1 >