Protege version?

[Samson Tu]

Hi,

I just downloaded and installed Knowtator 1.8 in the current release of Protege (3.4.1). After I configured the newspaper ontology with knowtator, I received a NoSuchMethodError exception when I tried to create an annotation on a class.

This leads me to wonder whether knowtator has been tested with the current version of Protege, and, if not, the appropriate Protege version that's compatible with knowtator.

Thanks.

Samson Tu

Load time for file:\C:\Program%20Files\Protege_3.4.1\examples\newspaper\newspape
r.pprj = 1 sec (project) + 0 sec (ui)
SEVERE: Uncaught Exception -- java.lang.NoSuchMethodError: edu.stanford.smi.prot
ege.model.KnowledgeBase.createSimpleInstance(Ledu/stanford/smi/protege/model/Fra
meID;Ljava/lang/String;Ljava/util/Collection;Z)Ledu/stanford/smi/protege/model/S
impleInstance;
        at edu.uchsc.ccp.knowtator.MentionUtil.createClassMention(MentionUtil.ja
va:266)
        at edu.uchsc.ccp.knowtator.MentionUtil.createMention(MentionUtil.java:36
2)
        at edu.uchsc.ccp.knowtator.KnowtatorManager.createAnnotation(KnowtatorMa
nager.java:693)
        at edu.uchsc.ccp.knowtator.KnowtatorManager.createAnnotation(KnowtatorMa
nager.java:677)
        at edu.uchsc.ccp.knowtator.ui.AnnotationSchemaMenuItemFactory$1.actionPe
rformed(AnnotationSchemaMenuItemFactory.java:76)
        at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:18
49)
        at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.jav
a:2169)
        at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel
.java:420)
        at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:258
)
        at javax.swing.AbstractButton.doClick(AbstractButton.java:302)
        at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:1
051)
        at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMen
uItemUI.java:1092)
        at java.awt.Component.processMouseEvent(Component.java:5517)
        at javax.swing.JComponent.processMouseEvent(JComponent.java:3135)
        at java.awt.Component.processEvent(Component.java:5282)
        at java.awt.Container.processEvent(Container.java:1966)
        at java.awt.Component.dispatchEventImpl(Component.java:3984)
        at java.awt.Container.dispatchEventImpl(Container.java:2024)
        at java.awt.Component.dispatchEvent(Component.java:3819)
        at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4212
)
        at java.awt.LightweightDispatcher.processMouseEvent(Container.java:3892)

        at java.awt.LightweightDispatcher.dispatchEvent(Container.java:3822)
        at java.awt.Container.dispatchEventImpl(Container.java:2010)
        at java.awt.Window.dispatchEventImpl(Window.java:1791)
        at java.awt.Component.dispatchEvent(Component.java:3819)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
        at java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchTh
read.java:242)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThre
ad.java:163)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:157)

        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:149)

        at java.awt.EventDispatchThread.run(EventDispatchThread.java:110)

[Philip Ogren]

Samson,

You are right - 3.4.1 is not supported by Knowtator.  The correct version of Protege that you should use with Knowtator is version 3.3 (build 430) which can be found here:

http://protege.cim3.net/download/old-releases/3.3.1/basic/

This is version requirement is documented here:

http://knowtator.sourceforge.net/install.shtml

Hope this helps.

Philip

[Samson Tu]

Hi,

Is there any chance that Knowtator can be made compatible with Protege 3.4.1 soon? We have a requirement to use Protege 3.4.1 server, but the system administrator is balking at having multiple versions of Protege.

Samson