Informatics Research k-mer Tools / Bugs / #10 meryl: -L and -U work?

#10 meryl: -L and -U work?

Status: open

Owner: Brian Walenz

Labels: meryl (3)

Priority: 5

Updated: 2015-03-05

Created: 2008-11-06

Creator: Brian Walenz

Private: No

Do these options work?

Discussion

Dan Bolser - 2015-03-04

What should they do?

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Brian Walenz - 2015-03-05

-L should filter kmers with count below some threshold; -H similar. -M max (or min) will do the same operation, but need the mcdat/mcidx files from a finished meryl counting run.

http://kmer.sourceforge.net/wiki/index.php/Getting_Started_with_Meryl

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