Hi all,

Can I use Biopython with Jython2.5.1?
I have implemented the Object Factory Pattern to call jython modules from Java classes.
Now I am using a Java Servlet. My jython module imports biopython (from Bio import Entrez).
I have copied the jython.jar into the tomcat/lib folder.

When running all this on tomcat I get a error message that the Bio module cannot be found.
The .py, pyo, pyc files of Biopython are located under ../python/lib/site-packages
So there is no .jar file.

So my question is if I can get jython work with biopython, because it isn't included in jython. And if so, how could I tell tomcat where it has to search for the modules?


Cheers,
silvio