RE: [Jtreeview-users] How to do alignment view?

[Xiaoqing Z. <xia...@cg...>]

Hi Alok,

Thank you for your previous reply. It helped me a lot. I have few more
questions now:

I just wonder what class is used to read the data such as .cdt .gtr, =
into
TreeView application. If I want to let the new application I am writing =
to
read a new format file such a matrix file and make it available to some
panels, what is the best way to do it?

Second, I did not understand what is the function of MapContainer, can I =
just
use the TreeSelection class to represent the object which is current
selected?


Thanks for your help.


Xiaoqing

-----Original Message-----
From: Alok Saldanha [mailto:al...@ca...]=20
Sent: Tuesday, March 15, 2005 6:28 PM
To: Xiaoqing Zhang
Cc: jtr...@li...
Subject: Re: [Jtreeview-users] How to do alignment view?

You need to select "Linked" from the style pulldown on the=20
"File->Open..." dialog. Sorry about the confusion; at some point, I=20
hope to get rid of the style pulldown and make everything Linked.

	-Alok

On Mar 15, 2005, at 2:17 PM, Xiaoqing Zhang wrote:

> Hi Alok,
>
> =A0
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> I downloaded the human fgf files from samples. There are two files:=20
> fgf.cpt and fgf.gtr. But I noticed that when I start JTV, there is no=20
> menu item under Analysis and Export. So I can only open the file=20
> fgf.cpt from File menu. Then I only saw tree structure at the geneTree =

> panel, the Global pixels and Zoom pixels panel are gray colored. How=20
> can I see the nice image posted in the samples?
>
> =A0
>
> After I load the file, I can see some menu items under "Analysis". So=20
> I tried to do "analysis-> align to tree" , there is no "Alignment"=20
> menu item, then I opened the .cpt or .gtr file but no effect at all.
>
>  =A0
>
> Do I miss something here? I can open other sample .cpt files without=20
> any problem.
>
> =A0
>
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> Xiaoqing
>
> =A0
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