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writting unitcell coordinates and atoms information in a pdb file while using Reload+polyhedra option

Malik
2014-12-23
2014-12-23
  • Malik

    Malik - 2014-12-23

    Hey Everyone...

    In jmol I load my specific pdb file and then I use the option
    symmetry -> Reload+ polyhedra

    how to save the atoms and their coordinates in a pdb file. Because when I try it always gives me the coordinates for {3 3 3} unitcells. I am just interested in the atoms which are inside a single unitcell..

     
    • Bob Hanson

      Bob Hanson - 2014-12-23

      first select your atoms, then write the file.

      select cell=555

      On Tue, Dec 23, 2014 at 12:27 PM, Malik abmalik@users.sf.net wrote:

      Hey Everyone...

      In jmol I load my specific pdb file and then I use the option
      symmetry -> Reload+ polyhedra

      how to save the atoms and their coordinates in a pdb file. Because when I
      try it always gives me the coordinates for {3 3 3} unitcells. I am just
      interested in the atoms which are inside a single unitcell..


      writting unitcell coordinates and atoms information in a pdb file while
      using Reload+polyhedra option
      https://sourceforge.net/p/jsmol/discussion/general/thread/17ff461f/?limit=25#371a


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