For those proteins which do not have biologically significatn ligands (those apart from buffers or ions) in the crystallized structures, it may be essential to predict binding sites in them.
The PocketDepth program I have developed earlier can be re-written in Java and integrated into this package. For this purpose, I can start a seperate project or merge additional modules into the same present project. We can discuss more about this..
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For those proteins which do not have biologically significatn ligands (those apart from buffers or ions) in the crystallized structures, it may be essential to predict binding sites in them.
The PocketDepth program I have developed earlier can be re-written in Java and integrated into this package. For this purpose, I can start a seperate project or merge additional modules into the same present project. We can discuss more about this..