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[Jsbml-svn] SF.net SVN: jsbml:[2229] trunk/extensions/spatial/src/org/sbml/jsbml/ext/ spatial
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From: <pd...@us...> - 2015-04-23 09:43:44
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Revision: 2229
http://sourceforge.net/p/jsbml/code/2229
Author: pdp10
Date: 2015-04-23 09:43:42 +0000 (Thu, 23 Apr 2015)
Log Message:
-----------
update spatial package v0.90 - extraction of primitive types
Modified Paths:
--------------
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/ParametricObject.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SpatialPoints.java
Added Paths:
-----------
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/PolygonKind.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/PrimitiveKind.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SetOperation.java
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/ParametricObject.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/ParametricObject.java 2015-04-23 09:42:41 UTC (rev 2228)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/ParametricObject.java 2015-04-23 09:43:42 UTC (rev 2229)
@@ -38,54 +38,6 @@
public class ParametricObject extends AbstractSpatialNamedSBase {
/**
- * @author Alex Thomas
- * @author Andreas Dräger
- * @version $Rev$
- * @since 1.0
- */
- public enum PolygonKind {
- /**
- *
- */
- TRIANGLE,
-
- /**
- *
- */
- QUADRILATERAL;
- }
-
- public enum CompressionKind {
- /**
- *
- */
- UNCOMPRESSED,
- /**
- *
- */
- DEFLATED,
- /**
- *
- */
- BASE64;
- }
-
- public enum DataKind {
- /**
- *
- */
- UINT8,
- /**
- *
- */
- UINT16,
- /**
- *
- */
- UINT32;
- }
-
- /**
*
*/
private PolygonKind polygonType;
Added: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/PolygonKind.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/PolygonKind.java (rev 0)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/PolygonKind.java 2015-04-23 09:43:42 UTC (rev 2229)
@@ -0,0 +1,42 @@
+/*
+ * $Id: PolygonKind.java 2206 2015-04-23 09:57:59Z pdp10 $
+ * $URL: svn+ssh://pd...@sv.../p/jsbml/code/trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/PolygonKind.java $
+ * ----------------------------------------------------------------------------
+ * This file is part of JSBML. Please visit <http://sbml.org/Software/JSBML>
+ * for the latest version of JSBML and more information about SBML.
+ *
+ * Copyright (C) 2009-2015 jointly by the following organizations:
+ * 1. The University of Tuebingen, Germany
+ * 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
+ * 3. The California Institute of Technology, Pasadena, CA, USA
+ * 4. The University of California, San Diego, La Jolla, CA, USA
+ * 5. The Babraham Institute, Cambridge, UK
+ *
+ * This library is free software; you can redistribute it and/or modify it
+ * under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation. A copy of the license agreement is provided
+ * in the file named "LICENSE.txt" included with this software distribution
+ * and also available online as <http://sbml.org/Software/JSBML/License>.
+ * ----------------------------------------------------------------------------
+ */
+package org.sbml.jsbml.ext.spatial;
+
+/**
+ * This enum type was created following the specifications defined in Spatial Package v0.90.
+ * @author Alex Thomas
+ * @author Andreas Dräger
+ * @author Piero Dalle Pezze
+ * @version $Rev: 2209 $
+ * @since 1.0
+ */
+public enum PolygonKind {
+ /**
+ *
+ */
+ TRIANGLE,
+
+ /**
+ *
+ */
+ QUADRILATERAL;
+}
\ No newline at end of file
Added: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/PrimitiveKind.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/PrimitiveKind.java (rev 0)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/PrimitiveKind.java 2015-04-23 09:43:42 UTC (rev 2229)
@@ -0,0 +1,62 @@
+/*
+ * $Id: CompressionKind.java 2206 2015-04-23 09:57:59Z pdp10 $
+ * $URL: svn+ssh://pd...@sv.../p/jsbml/code/trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CompressionKind.java $
+ * ----------------------------------------------------------------------------
+ * This file is part of JSBML. Please visit <http://sbml.org/Software/JSBML>
+ * for the latest version of JSBML and more information about SBML.
+ *
+ * Copyright (C) 2009-2015 jointly by the following organizations:
+ * 1. The University of Tuebingen, Germany
+ * 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
+ * 3. The California Institute of Technology, Pasadena, CA, USA
+ * 4. The University of California, San Diego, La Jolla, CA, USA
+ * 5. The Babraham Institute, Cambridge, UK
+ *
+ * This library is free software; you can redistribute it and/or modify it
+ * under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation. A copy of the license agreement is provided
+ * in the file named "LICENSE.txt" included with this software distribution
+ * and also available online as <http://sbml.org/Software/JSBML/License>.
+ * ----------------------------------------------------------------------------
+ */
+package org.sbml.jsbml.ext.spatial;
+
+/**
+ * This enum type was created following the specifications defined in Spatial Package v0.90.
+ * @author Alex Thomas
+ * @author Piero Dalle Pezze
+ * @version $Rev: 2203 $
+ * @since 1.0
+ * @date 10.12.2014
+ */
+public enum PrimitiveKind {
+ /**
+ * sphere
+ */
+ SPHERE,
+ /**
+ * cube
+ */
+ CUBE,
+ /**
+ * cylinder
+ */
+ CYLINDER,
+ /**
+ * cone
+ */
+ CONE,
+ /**
+ * circle
+ */
+ CIRCLE,
+ /**
+ * square
+ */
+ SQUARE,
+ /**
+ * rightTriangle
+ */
+ RIGHTTRIANGLE;
+
+}
\ No newline at end of file
Added: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SetOperation.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SetOperation.java (rev 0)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SetOperation.java 2015-04-23 09:43:42 UTC (rev 2229)
@@ -0,0 +1,45 @@
+/*
+ * $Id: CompressionKind.java 2206 2015-04-23 09:57:59Z pdp10 $
+ * $URL: svn+ssh://pd...@sv.../p/jsbml/code/trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CompressionKind.java $
+ * ----------------------------------------------------------------------------
+ * This file is part of JSBML. Please visit <http://sbml.org/Software/JSBML>
+ * for the latest version of JSBML and more information about SBML.
+ *
+ * Copyright (C) 2009-2015 jointly by the following organizations:
+ * 1. The University of Tuebingen, Germany
+ * 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
+ * 3. The California Institute of Technology, Pasadena, CA, USA
+ * 4. The University of California, San Diego, La Jolla, CA, USA
+ * 5. The Babraham Institute, Cambridge, UK
+ *
+ * This library is free software; you can redistribute it and/or modify it
+ * under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation. A copy of the license agreement is provided
+ * in the file named "LICENSE.txt" included with this software distribution
+ * and also available online as <http://sbml.org/Software/JSBML/License>.
+ * ----------------------------------------------------------------------------
+ */
+package org.sbml.jsbml.ext.spatial;
+
+/**
+ * This enum type was created following the specifications defined in Spatial Package v0.90.
+ * @author Alex Thomas
+ * @author Piero Dalle Pezze
+ * @version $Rev: 2203 $
+ * @since 1.0
+ * @date 10.12.2014
+ */
+public enum SetOperation {
+ /**
+ *
+ */
+ UNION,
+ /**
+ *
+ */
+ INTERSECTION,
+ /**
+ *
+ */
+ RELATIVECOMPONENT;
+}
\ No newline at end of file
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SpatialPoints.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SpatialPoints.java 2015-04-23 09:42:41 UTC (rev 2228)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SpatialPoints.java 2015-04-23 09:43:42 UTC (rev 2229)
@@ -42,44 +42,6 @@
private static final long serialVersionUID = -3467717442431545263L;
- public enum CompressionKind {
- /**
- *
- */
- UNCOMPRESSED,
- /**
- *
- */
- DEFLATED,
- /**
- *
- */
- BASE64;
- }
-
- public enum DataKind {
- /**
- *
- */
- UINT8,
- /**
- *
- */
- UINT16,
- /**
- *
- */
- UINT32,
- /**
- *
- */
- FLOAT,
- /**
- *
- */
- DOUBLE;
- }
-
/**
*
*/
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