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[Jsbml-svn] SF.net SVN: jsbml:[2227] trunk
|
From: <and...@us...> - 2015-04-23 09:21:16
|
Revision: 2227
http://sourceforge.net/p/jsbml/code/2227
Author: andreas-draeger
Date: 2015-04-23 09:21:12 +0000 (Thu, 23 Apr 2015)
Log Message:
-----------
* Removed unnecessary "+" symbol in getChildAt methods
* Added alternative constructors to the MathMLStaxCompiler
* Added more convenient methods to Annotation
* Smaller changes (such as removing unused imports)
Modified Paths:
--------------
trunk/core/src/org/sbml/jsbml/AbstractMathContainer.java
trunk/core/src/org/sbml/jsbml/AbstractSBase.java
trunk/core/src/org/sbml/jsbml/Annotation.java
trunk/core/src/org/sbml/jsbml/CVTerm.java
trunk/core/src/org/sbml/jsbml/Constraint.java
trunk/core/src/org/sbml/jsbml/Event.java
trunk/core/src/org/sbml/jsbml/KineticLaw.java
trunk/core/src/org/sbml/jsbml/Model.java
trunk/core/src/org/sbml/jsbml/Reaction.java
trunk/core/src/org/sbml/jsbml/SBMLDocument.java
trunk/core/src/org/sbml/jsbml/SpeciesReference.java
trunk/core/src/org/sbml/jsbml/util/compilers/MathMLXMLStreamCompiler.java
trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompModelPlugin.java
trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompSBMLDocumentPlugin.java
trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompSBasePlugin.java
trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/SBaseRef.java
trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/Submodel.java
trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DistribFunctionDefinitionPlugin.java
trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DistribSBasePlugin.java
trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DrawFromDistribution.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/BoundingBox.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/CubicBezier.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/Curve.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/GeneralGlyph.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/GraphicalObject.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/Layout.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/LineSegment.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/ReactionGlyph.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/ReferenceGlyph.java
trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/SpeciesReferenceGlyph.java
trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/MultiModelPlugin.java
trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/MultiSpeciesPlugin.java
trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/SpeciesFeatureType.java
trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/SpeciesType.java
trunk/extensions/qual/src/org/sbml/jsbml/ext/qual/QualModelPlugin.java
trunk/extensions/qual/src/org/sbml/jsbml/ext/qual/Transition.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/GlobalRenderInformation.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/GradientBase.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/GradientStop.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/Image.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/LineEnding.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/LinearGradient.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/LocalRenderInformation.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/Polygon.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/Rectangle.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderCubicBezier.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderGroup.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderInformationBase.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderLayoutPlugin.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderListOfLayoutsPlugin.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderPoint.java
trunk/extensions/render/src/org/sbml/jsbml/ext/render/Style.java
trunk/extensions/req/src/org/sbml/jsbml/ext/req/ReqSBasePlugin.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/AnalyticGeometry.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGHomogeneousTransformation.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGObject.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGSetOperator.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGTransformation.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CoordinateComponent.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/Domain.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/Geometry.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/MixedGeometry.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SampledField.java
trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SampledFieldGeometry.java
trunk/modules/celldesigner/src/org/sbml/jsbml/celldesigner/SBMLLayoutVisualizer.java
Modified: trunk/core/src/org/sbml/jsbml/AbstractMathContainer.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/AbstractMathContainer.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/AbstractMathContainer.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -151,7 +151,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/core/src/org/sbml/jsbml/AbstractSBase.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/AbstractSBase.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/AbstractSBase.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -397,7 +397,7 @@
}
/* (non-Javadoc)
- * @see org.sbml.jlibsbml.SBase#appendNotes(java.lang.String)
+ * @see org.sbml.jsbml.SBase#appendNotes(java.lang.String)
*/
@Override
public void appendNotes(String notes) throws XMLStreamException {
Modified: trunk/core/src/org/sbml/jsbml/Annotation.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/Annotation.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/Annotation.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -577,6 +577,14 @@
return getNonRDFannotation();
}
+ /**
+ *
+ * @param nonRDFannotation
+ */
+ public void setXMLNode(XMLNode nonRDFannotation) {
+ setNonRDFAnnotation(nonRDFannotation);
+ }
+
/* (non-Javadoc)
* @see org.sbml.jsbml.AbstractTreeNode#hashCode()
*/
Modified: trunk/core/src/org/sbml/jsbml/CVTerm.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/CVTerm.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/CVTerm.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -29,7 +29,6 @@
import java.util.regex.Pattern;
import javax.swing.tree.TreeNode;
-import javax.xml.stream.XMLStreamException;
import org.sbml.jsbml.util.StringTools;
import org.sbml.jsbml.util.TreeNodeAdapter;
Modified: trunk/core/src/org/sbml/jsbml/Constraint.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/Constraint.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/Constraint.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -126,7 +126,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/core/src/org/sbml/jsbml/Event.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/Event.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/Event.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -405,7 +405,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/core/src/org/sbml/jsbml/KineticLaw.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/KineticLaw.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/KineticLaw.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -289,7 +289,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/core/src/org/sbml/jsbml/Model.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/Model.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/Model.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -1877,7 +1877,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/core/src/org/sbml/jsbml/Reaction.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/Reaction.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/Reaction.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -512,7 +512,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/core/src/org/sbml/jsbml/SBMLDocument.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/SBMLDocument.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/SBMLDocument.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -663,7 +663,7 @@
}
}
throw new IndexOutOfBoundsException(MessageFormat.format("Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/core/src/org/sbml/jsbml/SpeciesReference.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/SpeciesReference.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/SpeciesReference.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -280,7 +280,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/core/src/org/sbml/jsbml/util/compilers/MathMLXMLStreamCompiler.java
===================================================================
--- trunk/core/src/org/sbml/jsbml/util/compilers/MathMLXMLStreamCompiler.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/core/src/org/sbml/jsbml/util/compilers/MathMLXMLStreamCompiler.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -114,6 +114,25 @@
}
/**
+ *
+ * @param indent
+ * @throws XMLStreamException
+ */
+ public MathMLXMLStreamCompiler(String indent) throws XMLStreamException {
+ SMOutputFactory smFactory = new SMOutputFactory(XMLOutputFactory.newInstance());
+ writer = smFactory.createStax2Writer(new StringWriter());
+ this.indent = indent;
+ }
+
+ /**
+ * @throws XMLStreamException
+ *
+ */
+ public MathMLXMLStreamCompiler() throws XMLStreamException {
+ this("");
+ }
+
+ /**
* Writes an {@link ASTNode} the mathML.
*
* @param astNode the {@link ASTNode} to serialize as mathML
Modified: trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompModelPlugin.java
===================================================================
--- trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompModelPlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompModelPlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -273,7 +273,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- childIndex, +Math.min(pos, 0)));
+ childIndex, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompSBMLDocumentPlugin.java
===================================================================
--- trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompSBMLDocumentPlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompSBMLDocumentPlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -601,7 +601,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- childIndex, +Math.min(pos, 0)));
+ childIndex, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompSBasePlugin.java
===================================================================
--- trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompSBasePlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/CompSBasePlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -536,7 +536,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
Modified: trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/SBaseRef.java
===================================================================
--- trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/SBaseRef.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/SBaseRef.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -486,7 +486,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/Submodel.java
===================================================================
--- trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/Submodel.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/comp/src/org/sbml/jsbml/ext/comp/Submodel.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -616,7 +616,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DistribFunctionDefinitionPlugin.java
===================================================================
--- trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DistribFunctionDefinitionPlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DistribFunctionDefinitionPlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -178,7 +178,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
@Override
Modified: trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DistribSBasePlugin.java
===================================================================
--- trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DistribSBasePlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DistribSBasePlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -186,7 +186,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
@Override
Modified: trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DrawFromDistribution.java
===================================================================
--- trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DrawFromDistribution.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/distrib/src/org/sbml/jsbml/ext/distrib/DrawFromDistribution.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -480,7 +480,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/BoundingBox.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/BoundingBox.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/BoundingBox.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -230,7 +230,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/CubicBezier.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/CubicBezier.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/CubicBezier.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -238,7 +238,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/Curve.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/Curve.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/Curve.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -172,7 +172,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/GeneralGlyph.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/GeneralGlyph.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/GeneralGlyph.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -526,7 +526,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/GraphicalObject.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/GraphicalObject.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/GraphicalObject.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -250,7 +250,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/Layout.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/Layout.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/Layout.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -623,7 +623,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/LineSegment.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/LineSegment.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/LineSegment.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -219,7 +219,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/ReactionGlyph.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/ReactionGlyph.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/ReactionGlyph.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -228,7 +228,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/ReferenceGlyph.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/ReferenceGlyph.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/ReferenceGlyph.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -180,7 +180,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/SpeciesReferenceGlyph.java
===================================================================
--- trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/SpeciesReferenceGlyph.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/layout/src/org/sbml/jsbml/ext/layout/SpeciesReferenceGlyph.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -179,7 +179,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/MultiModelPlugin.java
===================================================================
--- trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/MultiModelPlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/MultiModelPlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -290,7 +290,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- childIndex, +Math.min(pos, 0)));
+ childIndex, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/MultiSpeciesPlugin.java
===================================================================
--- trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/MultiSpeciesPlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/MultiSpeciesPlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -622,7 +622,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- childIndex, +Math.min(pos, 0)));
+ childIndex, Math.min(pos, 0)));
}
@Override
Modified: trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/SpeciesFeatureType.java
===================================================================
--- trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/SpeciesFeatureType.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/SpeciesFeatureType.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -526,7 +526,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
Modified: trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/SpeciesType.java
===================================================================
--- trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/SpeciesType.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/multi/src/org/sbml/jsbml/ext/multi/SpeciesType.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -1298,7 +1298,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
Modified: trunk/extensions/qual/src/org/sbml/jsbml/ext/qual/QualModelPlugin.java
===================================================================
--- trunk/extensions/qual/src/org/sbml/jsbml/ext/qual/QualModelPlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/qual/src/org/sbml/jsbml/ext/qual/QualModelPlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -191,7 +191,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- childIndex, +Math.min(pos, 0)));
+ childIndex, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/qual/src/org/sbml/jsbml/ext/qual/Transition.java
===================================================================
--- trunk/extensions/qual/src/org/sbml/jsbml/ext/qual/Transition.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/qual/src/org/sbml/jsbml/ext/qual/Transition.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -391,7 +391,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}",
- index, +Math.min(pos, 0)));
+ index, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/GlobalRenderInformation.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/GlobalRenderInformation.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/GlobalRenderInformation.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -312,7 +312,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/GradientBase.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/GradientBase.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/GradientBase.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -156,7 +156,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/**
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/GradientStop.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/GradientStop.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/GradientStop.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -187,7 +187,7 @@
int pos = 0;
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/Image.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/Image.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/Image.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -286,7 +286,7 @@
int pos = 0;
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/**
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/LineEnding.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/LineEnding.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/LineEnding.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -122,7 +122,7 @@
int pos = 0;
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/**
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/LinearGradient.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/LinearGradient.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/LinearGradient.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -214,7 +214,7 @@
int pos = 0;
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/**
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/LocalRenderInformation.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/LocalRenderInformation.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/LocalRenderInformation.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -304,7 +304,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/Polygon.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/Polygon.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/Polygon.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -108,7 +108,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/Rectangle.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/Rectangle.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/Rectangle.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -794,7 +794,7 @@
int pos = 0;
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderCubicBezier.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderCubicBezier.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderCubicBezier.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -146,7 +146,7 @@
int pos = 0;
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderGroup.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderGroup.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderGroup.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -379,7 +379,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderInformationBase.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderInformationBase.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderInformationBase.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -700,7 +700,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderLayoutPlugin.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderLayoutPlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderLayoutPlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -119,7 +119,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/**
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderListOfLayoutsPlugin.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderListOfLayoutsPlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderListOfLayoutsPlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -131,7 +131,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderPoint.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderPoint.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/RenderPoint.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -119,7 +119,7 @@
int pos = 0;
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", childIndex,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/render/src/org/sbml/jsbml/ext/render/Style.java
===================================================================
--- trunk/extensions/render/src/org/sbml/jsbml/ext/render/Style.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/render/src/org/sbml/jsbml/ext/render/Style.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -172,7 +172,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/*
Modified: trunk/extensions/req/src/org/sbml/jsbml/ext/req/ReqSBasePlugin.java
===================================================================
--- trunk/extensions/req/src/org/sbml/jsbml/ext/req/ReqSBasePlugin.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/req/src/org/sbml/jsbml/ext/req/ReqSBasePlugin.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -332,7 +332,7 @@
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
// TODO - support the old attributes from the first draft specs ??
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/AnalyticGeometry.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/AnalyticGeometry.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/AnalyticGeometry.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -265,7 +265,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGHomogeneousTransformation.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGHomogeneousTransformation.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGHomogeneousTransformation.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -281,7 +281,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGObject.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGObject.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGObject.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -397,7 +397,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGSetOperator.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGSetOperator.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGSetOperator.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -631,7 +631,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGTransformation.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGTransformation.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CSGTransformation.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -188,7 +188,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
}
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CoordinateComponent.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CoordinateComponent.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/CoordinateComponent.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -344,7 +344,7 @@
}
throw new IndexOutOfBoundsException(isLeaf() ? MessageFormat.format(
"Node {0} has no children.", getElementName()) : MessageFormat.format(
- "Index {0,number,integer} >= {1,number,integer}", childIndex, +Math.min(pos, 0)));
+ "Index {0,number,integer} >= {1,number,integer}", childIndex, Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/Domain.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/Domain.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/Domain.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -349,7 +349,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/Geometry.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/Geometry.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/Geometry.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -1359,7 +1359,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
}
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/MixedGeometry.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/MixedGeometry.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/MixedGeometry.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -525,7 +525,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SampledField.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SampledField.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SampledField.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -729,7 +729,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
Modified: trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SampledFieldGeometry.java
===================================================================
--- trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SampledFieldGeometry.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/extensions/spatial/src/org/sbml/jsbml/ext/spatial/SampledFieldGeometry.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -364,7 +364,7 @@
}
throw new IndexOutOfBoundsException(MessageFormat.format(
"Index {0,number,integer} >= {1,number,integer}", index,
- +Math.min(pos, 0)));
+ Math.min(pos, 0)));
}
/* (non-Javadoc)
Modified: trunk/modules/celldesigner/src/org/sbml/jsbml/celldesigner/SBMLLayoutVisualizer.java
===================================================================
--- trunk/modules/celldesigner/src/org/sbml/jsbml/celldesigner/SBMLLayoutVisualizer.java 2015-04-23 08:49:20 UTC (rev 2226)
+++ trunk/modules/celldesigner/src/org/sbml/jsbml/celldesigner/SBMLLayoutVisualizer.java 2015-04-23 09:21:12 UTC (rev 2227)
@@ -114,7 +114,7 @@
public void actionPerformed(ActionEvent e) {
JFileChooser chooser = new JFileChooser(new File(System
.getProperties().getProperty("user.home") + "/Desktop"));
- SBMLFileFilter fileFilter=new SBMLFileFilter();
+ SBMLFileFilter fileFilter = new SBMLFileFilter();
chooser.setFileFilter(fileFilter);
int retrival = chooser.showSaveDialog(null);
if (retrival == JFileChooser.APPROVE_OPTION) {
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